New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3101756	NA (NA)	6 (0.030)	5/242	NT	NA	noncoding (61/79 nt)	REP218 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP218 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 4470461	NA (NA)					noncoding (81/88 nt)	RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

AGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3101604‑3101756 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGC  <  NC_000913/4470461‑4470315                                                                                                                                                                                                                                                                                                              AGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCC                                                                                                                                                         >  4:954396/1‑149  GCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCT                                                                                                                                                        <  3:1343412/149‑1  GCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCT                                                                                                                                                        <  4:878601/149‑1  GCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCT                                                                                                                                                        <  3:143462/149‑1  GCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCT                                                                                                                                                        <  2:1583364/149‑1    AGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGA                                                                                                                                                      >  4:1295514/1‑149    AGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGA                                                                                                                                                      <  3:954396/149‑1    AGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGAATGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGA                                                                                                                                                      <  4:1579339/149‑1                       TCTTCCCTCAAGAAAAAATTAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATGCGCTACGCTTATCAGGC                                                                                                                                   <  4:1150044/149‑1                         TTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATGCGCTACGCTTATCAGGCCT                                                                                                                                 <  1:696642/149‑1                                                                                         CCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATGCGCTACGCTTATCAGGC                                                                                                                                   >  1:22912/1‑83                                                                                         CCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATGCGCTACGCTTATCAGGC                                                                                                                                   <  2:22912/83‑1                                                                                                            AACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATGCGCTACGCTTATC                                                                                                                                       <  1:7886/60‑1                                                                                                            AACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATGCGCTACGCTTATC                                                                                                                                       >  2:7886/1‑60                                                                                                                                                    CCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTA      >  1:818163/1‑149                                                                                                                                                     CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTAT     <  3:1006345/149‑1                                                                                                                                                      tggTGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCTGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATT    <  1:1493303/146‑1                                                                                                                                                      TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATT    >  2:1378976/1‑149                                                                                                                                                      TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATT    >  4:512389/1‑149                                                                                                                                                      TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATGTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATT    <  3:170119/149‑1                                                                                                                                                       GATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTG   >  2:6592/1‑149                                                                                                                                                       GATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTG   >  1:486118/1‑149                                                                                                                                                       GATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTG   >  4:885192/1‑149                                                                                                                                                       GATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTG   >  2:1446837/1‑149                                                                                                                                                       GATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTC                                               >  4:1294788/1‑105                                                                                                                                                       GATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTC                                               <  3:1294788/105‑1                                                                                                                                                        ATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGC  <  3:696253/149‑1                                                                                                                                                         TGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGC  <  3:1399738/148‑1                                                                                                                                                         TGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGC  >  4:1399738/1‑148                                                                                                                                                                                                                                                                                                              AGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3101604‑3101756 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGC  <  NC_000913/4470461‑4470315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.