New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3101756NA (NA)6 (0.030) 5/242 NT NA noncoding (61/79 nt) REP218 (repetitive extragenic palindromic) element; contains 2 REP sequences REP218 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4470461 NA (NA)noncoding (81/88 nt) RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 200 total aligned reads displayed.

ATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGTTCTTCGGTG  >  NC_000913/3101610‑3101903
                                                                                                                                                  |                                                                                                                                                   
 ttttGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAg                                                                                                                                                  >  3:775803/1‑149 (MQ=255)
  tttGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGc                                                                                                                                                 <  4:1618780/149‑1 (MQ=255)
  tttGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGc                                                                                                                                                 <  1:950497/149‑1 (MQ=255)
  tttGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGc                                                                                                                                                 <  2:439897/149‑1 (MQ=255)
     gcgcATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTa                                                                                                                                              <  4:1280691/149‑1 (MQ=255)
           catAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTTGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCAt                                                                                                                                        <  2:96984/149‑1 (MQ=255)
                tCTTCCCTCAAGAAAAAATTAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATgcgctacgcttatcaggc                                                                                                                                   <  4:1150044‑M1/149‑19 (MQ=255)
                     ccTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                                                                                                                              >  4:777442/1‑149 (MQ=255)
                     ccTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                                                                                                                              >  4:1239866/1‑149 (MQ=255)
                      cTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGtttt                                                                                                                             <  4:828891/149‑1 (MQ=255)
                      cTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGtttt                                                                                                                             >  4:7327/1‑149 (MQ=255)
                          aGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATc                                                                                                                                       >  2:799395/1‑135 (MQ=255)
                            aaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAttt                                                                                                                       >  1:938000/1‑149 (MQ=255)
                            aaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAttt                                                                                                                       <  3:1157533/149‑1 (MQ=255)
                                 aTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCGTGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCAt                                                                                                                  >  2:1470542/1‑149 (MQ=255)
                                      gCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGTCAGTTTTGCATTTGTCATCGccc                                                                                                             <  2:1453327/149‑1 (MQ=255)
                                      gCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGccc                                                                                                             >  1:1014018/1‑149 (MQ=255)
                                      gCCAGCATTTGCTGGCCCCAAATTGATAAGAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGccc                                                                                                             >  1:1365671/1‑149 (MQ=255)
                                      gCCAGCAAATGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAg                                                                                                                                                  <  2:1383537/112‑1 (MQ=255)
                                       ccAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCg                                                                                                            >  2:853072/1‑149 (MQ=255)
                                        cAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGt                                                                                                           >  2:206311/1‑149 (MQ=255)
                                             tttGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCt                                                                                                      >  1:960758/1‑149 (MQ=255)
                                                gCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTc                                                                                                   <  3:1444447/149‑1 (MQ=255)
                                                   ggCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTa                                                                                                <  1:1455227/149‑1 (MQ=255)
                                                     ccccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGt                                                                                              >  1:1156806/1‑149 (MQ=255)
                                                      cccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATaa                                                                                                                                                   >  3:529044/1‑95 (MQ=255)
                                                      cccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTc                                                                                             >  2:703513/1‑149 (MQ=255)
                                                      cccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTc                                                                                             <  2:604505/149‑1 (MQ=255)
                                                      cccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTc                                                                                             >  3:1257136/1‑149 (MQ=255)
                                                      cccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTc                                                                                             >  1:584408/1‑149 (MQ=255)
                                                      cccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTc                                                                                             >  2:10698/1‑149 (MQ=255)
                                                      cccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTc                                                                                             >  2:1231124/1‑149 (MQ=255)
                                                       ccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGtttt                                                                                                                             >  4:68508/1‑116 (MQ=255)
                                                       ccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTcc                                                                                            >  3:1540777/1‑149 (MQ=255)
                                                         aGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCcca                                                                                          <  1:267570/149‑1 (MQ=255)
                                                         aGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCcca                                                                                          >  3:929292/1‑149 (MQ=255)
                                                                  aCAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                                                                                                                              <  4:783255/104‑1 (MQ=255)
                                                                    aaaGTACTCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGa                                                                               >  2:915649/1‑149 (MQ=255)
                                                                       gTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGaaaa                                                                            <  3:819282/149‑1 (MQ=255)
                                                                       gTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGaaaa                                                                            <  1:1231124/149‑1 (MQ=255)
                                                                       gTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGaaaa                                                                            <  1:652831/149‑1 (MQ=255)
                                                                          cgcgTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGtt                                                                         >  2:1048110/1‑149 (MQ=255)
                                                                           gcgTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTa                                                                                                >  2:306926/1‑125 (MQ=255)
                                                                           gcgTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTa                                                                                                <  1:306926/125‑1 (MQ=255)
                                                                           gcgTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTc                                                                        >  3:1305064/1‑149 (MQ=255)
                                                                                         ggATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCt                                                          <  1:1560184/149‑1 (MQ=255)
                                                                                             gcggcgTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATc                                                      <  3:573646/149‑1 (MQ=255)
                                                                                                  gTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGtt                                                 <  1:1300324/149‑1 (MQ=255)
                                                                                                  gTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGtt                                                 >  4:373838/1‑149 (MQ=255)
                                                                                                  gTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGtt                                                 <  4:22370/149‑1 (MQ=255)
                                                                                                     aaCACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATgcgctacgcttatc                                                                                                                                       <  1:7886‑M1/60‑15 (MQ=255)
                                                                                                     aaCACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTgc                                              <  4:951020/149‑1 (MQ=255)
                                                                                                     aaCACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTgc                                              <  2:875947/149‑1 (MQ=255)
                                                                                                     aaCACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTgc                                              <  2:1122867/149‑1 (MQ=255)
                                                                                                       cacCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTgcgc                                            <  4:929292/149‑1 (MQ=255)
                                                                                                         ccTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCGGTTTGCGctc                                          <  2:1496439/149‑1 (MQ=255)
                                                                                                           ttATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCtt                                        <  1:1267220/149‑1 (MQ=255)
                                                                                                           ttATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCtt                                        >  4:494242/1‑149 (MQ=255)
                                                                                                              tCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCa                                     <  1:1691423/149‑1 (MQ=255)
                                                                                                                ccGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGc                                   >  1:745539/1‑149 (MQ=255)
                                                                                                                ccGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGGGCGTACCTCATCCAGTTTGCGCTCTTCCAGc                                   >  4:55593/1‑149 (MQ=255)
                                                                                                                   ccTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCAc                                <  1:1396610/149‑1 (MQ=255)
                                                                                                                        tCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACg                           >  1:354557/1‑149 (MQ=255)
                                                                                                                          gATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGca                         >  3:1087012/1‑149 (MQ=255)
                                                                                                                           aTCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTAcc                                                           >  3:257978/1‑114 (MQ=255)
                                                                                                                              gTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTAc                            >  1:849467/1‑142 (MQ=255)
                                                                                                                               tGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATc                    <  1:879458/149‑1 (MQ=255)
                                                                                                                               tGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATACAGTTTGCGCTCTTCCAGCCACTTACGCACAATc                    >  3:61771/1‑149 (MQ=255)
                                                                                                                                gCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCg                   >  1:683290/1‑149 (MQ=255)
                                                                                                                                  aTCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTc                                                                        >  2:570809/1‑94 (MQ=255)
                                                                                                                                  aTCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTc                                                                        <  1:570809/94‑1 (MQ=255)
                                                                                                                                  aTCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGcc                 <  4:81355/149‑1 (MQ=255)
                                                                                                                                  aTCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGcc                 >  1:430657/1‑149 (MQ=255)
                                                                                                                                  aTCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGcc                 >  4:1409525/1‑149 (MQ=255)
                                                                                                                                  aTCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGcc                 <  4:1305064/149‑1 (MQ=255)
                                                                                                                                   tCTTTCCAGGCCTGATAAGCGTAGCGTATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCCCCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCt                <  2:83440/149‑1 (MQ=255)
                                                                                                                                   tCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCt                <  1:10698/149‑1 (MQ=255)
                                                                                                                                       tCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGATg            >  3:1201593/1‑149 (MQ=255)
                                                                                                                                          aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTAc                            <  4:45470/130‑1 (MQ=255)
                                                                                                                                          aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTAc                            >  3:45470/1‑130 (MQ=255)
                                                                                                                                          aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGttc         <  4:532050/149‑1 (MQ=255)
                                                                                                                                          aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGttc         >  3:1670446/1‑149 (MQ=255)
                                                                                                                                          aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGttc         >  3:174180/1‑149 (MQ=255)
                                                                                                                                          aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGttc         >  3:388367/1‑149 (MQ=255)
                                                                                                                                          aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGttc         >  3:738887/1‑149 (MQ=255)
                                                                                                                                            gCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGa              >  1:1411686/1‑142 (MQ=255)
                                                                                                                                             ccTGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccagtttattcttta      >  1:818163‑M1/1‑6 (MQ=255)
                                                                                                                                              cTGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccagtttattctttat     <  3:1006345‑M1/149‑145 (MQ=255)
                                                                                                                                              cTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGTTCTTCg     >  4:650045/1‑149 (MQ=255)
                                                                                                                                               tggtgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatctggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccagtttattctttatt    <  1:1493303‑M1/146‑146 (MQ=255)
                                                                                                                                               tGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccagtttattctttatt    >  2:1378976‑M1/1‑4 (MQ=255)
                                                                                                                                               tGATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccagtttattctttatt    >  4:512389‑M1/1‑4 (MQ=255)
                                                                                                                                               tGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGTTCTTCgg    >  2:34203/1‑149 (MQ=255)
                                                                                                                                                gATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccagtttattctttattg   >  1:486118‑M1/1‑3 (MQ=255)
                                                                                                                                                gATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccagtttattctttattg   >  2:1446837‑M1/1‑3 (MQ=255)
                                                                                                                                                gATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccagtttattctttattg   >  2:6592‑M1/1‑3 (MQ=255)
                                                                                                                                                gATgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccagtttattctttattg   >  4:885192‑M1/1‑3 (MQ=255)
                                                                                                                                                gATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGTTCTTCGGt   <  3:55593/149‑1 (MQ=255)
                                                                                                                                                 aTgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccagtttattctttattgc  <  3:696253‑M1/149‑148 (MQ=255)
                                                                                                                                                  tgcgctacgcttatcaggcctacgtgattcctgcaatttattgaatttgttggccggataaggcatttacgccgcatccggcatgaacaaaactcactttgtctacaatctgaatcggggctatcgtgcccagtttattctttattgc  >  4:1399738‑M1/1‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
ATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGTATGCTTTCTTAGTCCCACCAAACGTCGAAAAGTTCGCTGGTGCGTACCTCATCCAGTTTGCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGTTCTTCGGTG  >  NC_000913/3101610‑3101903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.