New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3203194	123 (0.670)	9 (0.050)	5/254	NT	6.9%	noncoding (51/125 nt)	REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913	= 3203228	NA (NA)					noncoding (85/125 nt)	REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences

GTGGAGATTCGCGAGGAGCTGACCCGACGGCGGATTGCGGCGGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3203046‑3203194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCAACGTTGTTCCTTCCAGCTGGCTACCGCCGCA  <  NC_000913/3203228‑3203081                                                                                                                                                                                                                                                                                                           GTGGAGATTCGCGAGGAGCTGACCCGACGGCGGATTGCGGCGGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTA                                                                                                                                                      <  1:184224/149‑1                             GGCGGATTGCGGCGGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTAT                                                                                                                          <  2:47178/149‑1                             GGCGGATTGCGGCGGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTAT                                                                                                                          <  4:938880/149‑1                                      CGGCGGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTAC                                                                                                                 <  3:1508613/149‑1                                                        AGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTATCAGGC                                                                                                                     >  3:5665/1‑127                                                        AGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTATCAGGC                                                                                                                     <  4:5665/127‑1                                                           AACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTA                                                                                                                  <  1:1558859/127‑1                                                           AACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTA                                                                                                                  >  2:1558859/1‑127                                                                      CCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCC                                                                                                                    >  3:425331/1‑114                                                                      CCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCC                                                                                                                    <  4:425331/114‑1                                                                                                                                                     ACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCAACGTTGTTCCTTCCAGCTGGCTACCGCCGCA  >  2:340731/1‑149                                                                                                                                                     ACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGG                                          <  1:989244/109‑1                                                                                                                                                     ACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGG                                          >  2:989244/1‑109                                                                                                                                                     ACGCCTGATGCGACGCTTGCGCGTCTTAACAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCAACGTTGTTCCTTCCAGCTGGCTACCGCCGCA  >  3:846075/1‑149                                                                                                                                                                                                                                                                                                           GTGGAGATTCGCGAGGAGCTGACCCGACGGCGGATTGCGGCGGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3203046‑3203194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCAACGTTGTTCCTTCCAGCTGGCTACCGCCGCA  <  NC_000913/3203228‑3203081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.