New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3203194123 (0.670)9 (0.050) 5/254 NT 6.9% noncoding (51/125 nt) REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913 = 3203228 NA (NA)noncoding (85/125 nt) REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences

Only 100 of 173 total aligned reads displayed.

TTGCGGCGGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATGGCGAACGGGATAAACGAA  >  NC_000913/3203080‑3203376
                                                                                                                                                    |                                                                                                                                                    
ttGCGGCGGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATATGACGCGCAAGCGTCGCATCAGGCg                                                                                                                                                      >  3:1480307/1‑149 (MQ=255)
ttGCGGCGGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCg                                                                                                                                                      >  1:256052/1‑149 (MQ=255)
 tGCGGCGGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGt                                                                                                                                                     >  2:340731‑M2/1‑148 (MQ=255)
  gcggcgGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGtt                                                                                                                                                    <  1:102118/149‑1 (MQ=255)
  gcggcgGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGtt                                                                                                                                                    <  2:703883/149‑1 (MQ=255)
    ggcggTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGa                                                                                                                                                  <  1:363648/149‑1 (MQ=255)
                   gaaggaaCAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATgcggcg                                                                                                                                   >  4:71150/1‑149 (MQ=255)
                      ggaaCAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGa                                                                                                                                >  2:77876/1‑149 (MQ=255)
                         acaacGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACg                                                                                                                             >  2:1683733/1‑149 (MQ=255)
                          caacGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGc                                                                                                                            <  2:1634727/149‑1 (MQ=255)
                            acGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCt                                                                                                                          <  4:110226/149‑1 (MQ=255)
                             cGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCACGCGTTGATTGCCGGATGCGGCGTGAACGCCtt                                                                                                                         >  4:293635/1‑149 (MQ=255)
                              gTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATgcggc                                                                                                                                    <  1:1633238/137‑1 (MQ=255)
                                   ccAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGcc                                                                                                                                             <  2:253781/123‑1 (MQ=255)
                                   ccAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCgg                                                                                                                   >  1:1268943/1‑149 (MQ=255)
                                   ccAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCgg                                                                                                                   >  2:1127798/1‑149 (MQ=255)
                                    cAAAGCCAGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGc                                                                                                                  <  4:168702/149‑1 (MQ=255)
                                        gCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTAc                                                                                                              <  1:691937/149‑1 (MQ=255)
                                         ccTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGt                                                                                                                                                     >  2:989244‑M2/1‑108 (MQ=255)
                                          cTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGc                                                                                                            >  1:889890/1‑149 (MQ=255)
                                              aTGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATc                                                                                                        <  2:1709035/149‑1 (MQ=255)
                                                 aGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGtt                                                                                                     <  3:405388/149‑1 (MQ=255)
                                                 aGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGtt                                                                                                     <  3:368768/149‑1 (MQ=255)
                                                 aGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGtt                                                                                                     <  3:187183/149‑1 (MQ=255)
                                                   tATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGa                                                                                                   <  4:1480307/149‑1 (MQ=255)
                                                       gggCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGtt                                                                                                     <  2:507743/143‑1 (MQ=255)
                                                       gggCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAAc                                                                                               >  2:913983/1‑149 (MQ=255)
                                                        ggCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACg                                                                                              >  4:45406/1‑149 (MQ=255)
                                                        ggCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACg                                                                                              >  4:149836/1‑149 (MQ=255)
                                                        ggCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACg                                                                                              >  4:1180120/1‑149 (MQ=255)
                                                        ggCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACg                                                                                              >  1:333719/1‑149 (MQ=255)
                                                         gCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGc                                                                                             <  1:1444251/149‑1 (MQ=255)
                                                           aTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCa                                                                                           >  3:1376002/1‑149 (MQ=255)
                                                            ttttGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCaa                                                                                          <  3:1196907/149‑1 (MQ=255)
                                                            ttttGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCaa                                                                                          >  3:834342/1‑149 (MQ=255)
                                                                    gATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGa                                                                                  >  3:1506497/1‑149 (MQ=255)
                                                                         ggcgTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTa                                                                             >  2:901182/1‑149 (MQ=255)
                                                                              aaaCGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCt                                                                        <  2:333719/149‑1 (MQ=255)
                                                                              aaaCGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCt                                                                        <  1:1249016/149‑1 (MQ=255)
                                                                              aaaCGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTCGATTGCCGGCTGCGGCGTGAACCCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCt                                                                        >  4:1015547/1‑149 (MQ=255)
                                                                               aaCGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCACGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTc                                                                       >  2:967581/1‑149 (MQ=255)
                                                                               aaCGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTc                                                                       >  4:1335505/1‑149 (MQ=255)
                                                                                aCGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCa                                                                      >  2:1598201/1‑149 (MQ=255)
                                                                                  gCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAAt                                                                    >  3:549100/1‑149 (MQ=255)
                                                                                   ccTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAAtt                                                                   <  3:1150174/149‑1 (MQ=255)
                                                                                   ccTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAAtt                                                                   <  3:260436/149‑1 (MQ=255)
                                                                                     ttATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTaa                                                                 >  1:1481523/1‑149 (MQ=255)
                                                                                       aTCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTaaaa                                                               <  3:1607832/149‑1 (MQ=255)
                                                                                             cTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAacac                                                         <  2:101904/149‑1 (MQ=255)
                                                                                              tACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCt                                                                                                                          >  4:680927/1‑83 (MQ=255)
                                                                                              tACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCt                                                                                                                          <  3:680927/83‑1 (MQ=255)
                                                                                                  tGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACAt                                                    >  4:825467/1‑149 (MQ=255)
                                                                                                    tCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATac                                                  >  2:1362142/1‑149 (MQ=255)
                                                                                                    tCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATac                                                  >  1:783397/1‑149 (MQ=255)
                                                                                                      aaCGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATacac                                                <  1:932537/149‑1 (MQ=255)
                                                                                                      aaCGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATacac                                                <  1:913983/149‑1 (MQ=255)
                                                                                                      aaCGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATacac                                                <  1:1127798/149‑1 (MQ=255)
                                                                                                         gACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGc                                             >  1:1607051/1‑149 (MQ=255)
                                                                                                             gTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAac                                                           <  4:395974/131‑1 (MQ=255)
                                                                                                             gTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAgcc                                         <  1:473927/149‑1 (MQ=255)
                                                                                                                gTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGtacaactgtcgttgacatgtagccggataaggcgtttacgccgcatccggcaaaatgcccaatactcattcaggctttgggcaacgttgttccttccagctggctaccgccg                                      <  3:1508613‑M2/149‑113 (MQ=255)
                                                                                                                 tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGtacaactgtcgttgacatgtagccggataaggcgtttacgccgcatccggcaaaatgcccaatactcattcaggctttgggcaacgttgtt                                                           <  1:1558859‑M2/127‑92 (MQ=255)
                                                                                                                 tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGtacaactgtcgttgacatgtagccggataaggcgtttacgccgcatccggcaaaatgcccaatactcattcaggctttgggcaacgttgtt                                                           >  2:1558859‑M2/1‑36 (MQ=255)
                                                                                                                 tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCca                                     <  4:1376002/149‑1 (MQ=255)
                                                                                                                 tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCCCAATTAAAAGAACACGACATACACCGCAGCCGCca                                     <  4:1679051/149‑1 (MQ=255)
                                                                                                                   ggCCTGATAAGACGCGCAAGCGTCGCATCAGGCGtacaactgtcgttgacatgtagccggataaggcgtttacgccgcatccggcaaaatgcccaatactcattcaggctttgg                                                                      <  4:425331‑M2/114‑81 (MQ=255)
                                                                                                                   ggCCTGATAAGACGCGCAAGCGTCGCATCAGGCGtacaactgtcgttgacatgtagccggataaggcgtttacgccgcatccggcaaaatgcccaatactcattcaggctttgg                                                                      >  3:425331‑M2/1‑34 (MQ=255)
                                                                                                                    gCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCaa                                                                                          >  1:237685/1‑93 (MQ=255)
                                                                                                                    gCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACaa                                  >  1:1070130/1‑149 (MQ=255)
                                                                                                                    gCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACaa                                  <  2:556477/149‑1 (MQ=255)
                                                                                                                    gCCTGATAAGACGCGCAAGCGTCGCATCAGGCCtacaactgtcgttgacatgtagccggataaggcgtttacgccgcatccggcaaaatgcccaatactcattcaggctttgggcaacgttgttcct                                                        >  3:5665‑M2/1‑33 (MQ=255)
                                                                                                                    gCCTGATAAGACGCGCAAGCGTCGCATCAGGCCtacaactgtcgttgacatgtagccggataaggcgtttacgccgcatccggcaaaatgcccaatactcattcaggctttgggcaacgttgttcct                                                        <  4:5665‑M2/127‑95 (MQ=255)
                                                                                                                     ccTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAAt                                 >  4:921206/1‑149 (MQ=255)
                                                                                                                     ccTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATGCCt                                                                        >  2:1326111/1‑110 (MQ=255)
                                                                                                                      cTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCTTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATa                                >  1:851758/1‑149 (MQ=255)
                                                                                                                      cTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATa                                >  3:460786/1‑149 (MQ=255)
                                                                                                                         aTAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAg                             <  2:783397/149‑1 (MQ=255)
                                                                                                                         aTAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATCCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAg                             <  2:1177919/149‑1 (MQ=255)
                                                                                                                         aTAAGACGCGCAAGCGTCGCATCAGGCCtacaactgtcgttgacatgtagccggataaggcgtttacgccgcatccggcaaaatgcccaatactcattcaggctttgggcaacgttgttccttccagctggctaccgccgcaatccgcc                             <  2:47178‑M2/149‑122 (MQ=255)
                                                                                                                          tAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGc                            <  3:1261560/149‑1 (MQ=255)
                                                                                                                          tAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGc                            <  4:421784/149‑1 (MQ=255)
                                                                                                                            aggcgcgCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGa                          <  3:222269/146‑1 (MQ=255)
                                                                                                                            aGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTaaaa                                                               >  4:1612977/1‑112 (MQ=255)
                                                                                                                            aGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGa                          >  3:447344/1‑149 (MQ=255)
                                                                                                                            aGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGa                          >  1:666540/1‑149 (MQ=255)
                                                                                                                             gACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGAt                         >  2:220746/1‑149 (MQ=255)
                                                                                                                             gACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCAACGCAATCGTTGACAACGCCAGGCATCCGACACTATTCCTCAATTAAAAGATCACGACATACACCGCAGCCGCCAGAATAAAGAGAt                         >  2:570440/1‑149 (MQ=38)
                                                                                                                                 cgcAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAAt                     <  4:144387/149‑1 (MQ=255)
                                                                                                                                  gcAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATg                    >  4:125342/1‑149 (MQ=255)
                                                                                                                                  gcAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATg                    >  2:692460/1‑149 (MQ=255)
                                                                                                                                   cAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATgg                   <  2:1070130/149‑1 (MQ=255)
                                                                                                                                      gCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATGGCGa                >  1:1501590/1‑149 (MQ=255)
                                                                                                                                        gTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTGCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATGGCGAAc              >  4:1159867/1‑149 (MQ=255)
                                                                                                                                        gTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATGGCGAAc              >  4:1528550/1‑149 (MQ=255)
                                                                                                                                                aGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATGGCGAACGGGATaaa      <  4:1532573/149‑1 (MQ=255)
                                                                                                                                                aGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATGGCGAACGGGATaaa      >  1:69604/1‑149 (MQ=255)
                                                                                                                                                 ggCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATGGCGAACGGGATAAAc     <  2:1481523/149‑1 (MQ=255)
                                                                                                                                                 ggCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATGGCGAACGGGATAAAc     <  3:921206/149‑1 (MQ=255)
                                                                                                                                                    gTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATGGCGAACGGGATAAACGaa  >  2:1511510/1‑149 (MQ=255)
                                                                                                                                                    gTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATGGCGAACGGGATAAACGaa  >  1:175969/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TTGCGGCGGTAGCCAGCTGGAAGGAACAACGTTGCCCAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGAACACGACATACACCGCAGCCGCCACAATAAAGCGATAAATGGCGAACGGGATAAACGAA  >  NC_000913/3203080‑3203376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.