Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979270 1979278 9–776 59 [0] [0] 59 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)58 (0.440) 45/502 1.6 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

TATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACG  >  NC_000913/1978229‑1978769
                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                           
tATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCACCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt                                                                                                                                                                                                                                                                            <  2:608698‑M1/275‑2 (MQ=255)
tATGCAGTTTCACCACACCCCGTGATGTCCACGGGAAGCCCCCGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGTGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt                                                                                                                                                                                                                                                                            <  3:797237‑M1/275‑2 (MQ=255)
                 ccccGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAACTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTATACGCATATACAACGGAGGGGCGCTGCGATTTTTAAGAATGCGTGATGCAGACGAAAAAAAACACTCAATTACTTAACAACAACGtataagtcatacttttca                                                                                                                                                                                                                                                           >  4:563751‑M1/1‑257 (MQ=255)
                     gTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATAAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAGATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                                                                                                                                        <  1:249337‑M1/274‑22 (MQ=255)
                     gTGATGTCGCCGGGAAGACCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                                                                                                                                        <  2:387288‑M1/274‑22 (MQ=255)
                        aTGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAATCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                                                                                                                                                    <  1:203414‑M1/275‑26 (MQ=255)
                        aTGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTACACTAGTTTCGATACACTTCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAATATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                                                                                                                                                    <  2:351428‑M1/275‑26 (MQ=255)
                              ccGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCTTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTCATGCAGACCACCCAAAACACTCAATTACTTAACATAAATGtataagtcatacttttt                                                                                                                                                                                                                                                            >  3:716907‑M1/1‑244 (MQ=255)
                                  gAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                                                                                                                                        <  1:716907‑M1/261‑22 (MQ=255)
                                                 aataatTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                                                                                                                                                        >  3:730498‑M1/1‑225 (MQ=255)
                                                    aattagaattagAATAGTTTAGATAAGCTGCAATAAGCAGAACCACCTTTTTTGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                                                                                                                                                        <  2:203234‑M1/275‑54 (MQ=255)
                                                     atTAGCATTTGAATAGTTGCCATAAGATTCAATAAGAAGAACCACCTTCTTGGGTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTTAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTAAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                                                                                                                                                        <  3:712716‑M1/274‑54 (MQ=255)
                                                     atTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                                                                                                                                                    <  1:730498‑M1/230‑10 (MQ=255)
                                                                    gTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCCCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAAATCACACAAAACACTCAATTACTTAACATAAATGtataagtaatacttttgtttttgttttttttcaatcttttaaaaatttttttgctatgctagtaagcaa                                                                                                                                                                                                        >  3:745227‑M1/1‑206 (MQ=255)
                                                                     ttGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGCTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatccttttgttttgggtgtatttcaatctgtcaaaaagtttttcgctacgctagaaagcaaa                                                                                                                                                                                                       >  2:198369‑M1/1‑205 (MQ=255)
                                                                       gCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttaaatctgttaaaaagtttttcgctacgctatgaagcaaaaa                                                                                                                                                                                                     >  2:150102‑M1/1‑203 (MQ=255)
                                                                                          aGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTCATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGCGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatacgtaatacttttgtttttggtgtatttcaatatgttaaaaagttttttgctacgatagcaagcaaatattaaacaggaataat                                                                                                                                                                                      >  4:554922‑M1/1‑184 (MQ=255)
                                                                                           gAACCACCTTTTTTGTTTAATATGTCCTTACAAATAGAAATTGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGAACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                                                                                                                                                                 <  1:745227‑M1/275‑93 (MQ=255)
                                                                                            aaCCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCCTCACTACACGCACATACAACGGCGGGGGGCTGCGATTTCCAATAATGCGTGAGGCAGATAACACAAAACACTCAATTACTAAACATAAATGtataagtcataattttgtttcgggtgtatctaaatttgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggattaaacgaaat                                                                                                                                                                                >  4:380464‑M1/1‑182 (MQ=255)
                                                                                              ccaccTTTTTGGTTTAAAATGTCCTTACAAATAGAAATGGGTCTTTACACTCATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCAATACACGCACATACAACGGAGGGAGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAAAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa                                                                                                                                                                                  <  2:554922‑M1/271‑92 (MQ=255)
                                                                                               caccTTGTTAGTTTAATAAGTCCTTACAAATAGAAATGGGTCGTTACACTTATCTAAGAATTTTCCTAAATCGACGCAACTATACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTAAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg                                                                                                                                                                             <  2:563751‑M1/275‑97 (MQ=255)
                                                                                                           ttAATATGTCCTTACAAAAAAGAATGTGTCATTACACTTATCTAAGAATTTTCCGAAAGCGACGCAACTGTACTCGTAAATACACGGACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttatgttttgggtgtagttcaatctgttaaaaagtttttcgctacgctagcaaggaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                                                                                                                                                 <  1:323967‑M1/275‑109 (MQ=255)
                                                                                                            tAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATATAAGCTTTTCCCTAAAACGACGCAACTGTACTCGTCACTACACGCACATACCACGTAGGGGGGCCGCGATTTTCAATAATGCGTGGTGCAGACCACACAACGCAATCAATTACTTAACATAAATGtataagtcatacttttgttgtggctgtattcacatctgttaaaaagtttttcgctacgctcgcaagcaaaaattaaaaaggaataatcgaaatgggattgttggcaaat                                                                                                                                                                >  3:511680‑M1/1‑166 (MQ=255)
                                                                                                             aaTTTGTCCTTACAAATACAAATGGGTATTTACACCTATCTAAGAATTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTAAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagt                                                                                                                                                               <  4:456146‑M1/275‑111 (MQ=255)
                                                                                                                atGTCCTTACAAATAAGAATGGTTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                                                                                                                                                    <  1:101120‑M1/187‑26 (MQ=255)
                                                                                                                        aCAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaccaggaataatcgaaatgggatgttgcgcacagtcaacataacca                                                                                                                                                    >  1:4597‑M1/1‑154 (MQ=255)
                                                                                                                         cAAATAGAAATGGGTCGTTACACTTATATAAGATATTTCCGAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGATGCGATTTTCAATAAGGCGTGATGCAGATCACACAAAACACTCAAGTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca                                                                                                                                                   <  1:5892‑M1/275‑123 (MQ=255)
                                                                                                                                       tatttacACTTATCTAAAATTTTTCCGAAATCGACGCAACTGTACACGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat                                                                                                                                     <  3:124166‑M1/273‑137 (MQ=255)
                                                                                                                                                ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataa                                                                                                                                         >  1:124166‑M1/1‑130 (MQ=255)
                                                                                                                                                ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                                                                                                                                                        >  1:24418‑M1/1‑130 (MQ=255)
                                                                                                                                                    cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgc                                                                                                                                                                    <  3:24418‑M1/231‑106 (MQ=255)
                                                                                                                                                          atgttccaAAATCGAAAGAAATGTACACGTCAATACAAGCAAAGACAACGGAGGAGTGCTGAGATTTTCAATAATGCGTGCTGCAAATCACAAAAAACAATCAATTAATTAACATAAAAGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcangcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactaaccgtaaataatcatctgctataaataatcactt                                                                                                                  <  4:359736‑M1/272‑156 (MQ=255)
                                                                                                                                                             ttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                                                                                                                                                                                                         >  3:754283‑M1/1‑117 (MQ=255)
                                                                                                                                                                 tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                                                                                                                                                     <  1:754283‑M1/185‑73 (MQ=255)
                                                                                                                                                                                 tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttttggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatagaaatgggatgttgcgcacagtcaaaataactaaccgtaaataataatctgctaaaaataataaagttcatgcaatacctgtctattat                                                                                            >  4:605563‑M1/1‑97 (MQ=255)
                                                                                                                                                                                     cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTAAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttttagtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactt                                                                                                                  <  2:605563‑M1/248‑156 (MQ=255)
                                                                                                                                                                                      gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatc                                                                                                                      >  3:19440‑M1/1‑92 (MQ=255)
                                                                                                                                                                                        cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttt                                                                                        >  3:107244‑M1/1‑90 (MQ=255)
                                                                                                                                                                                         aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagat                                                                                                  >  2:19730‑M1/1‑89 (MQ=255)
                                                                                                                                                                                          cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactt                                                                                                                  <  1:19440‑M1/243‑156 (MQ=255)
                                                                                                                                                                                            acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaa                                                                                    <  1:107244‑M1/271‑186 (MQ=255)
                                                                                                                                                                                                gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagat                                                                                                  >  1:677778‑M1/1‑82 (MQ=255)
                                                                                                                                                                                                    aTAAAACGGAGGGGGGATGCTATTTTCAATAATGCGTGATTAAGATCACAAAAAACACTAAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagc                                                                                              <  3:677778‑M1/253‑176 (MQ=255)
                                                                                                                                                                                                     tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagat                                                                                                  >  3:52434‑M1/1‑77 (MQ=255)
                                                                                                                                                                                                         aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagc                                                                                              <  1:52434‑M1/248‑176 (MQ=255)
                                                                                                                                                                                                          cggagagtagctgcgatttTCAATAATTCGTGATACAGATCACACAAAACACTCAATTACTTAAATTAAATGtataagtcatacttttgttttaggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaa                                                                  <  3:740740‑M1/266‑204 (MQ=255)
                                                                                                                                                                                                              ggggggCTGCGATTTTCAATAATGCGTGATTCAGATCACACAAAACACTCAATTACTTAACATAAATGtataattcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagc                                                                                              <  1:192045‑M1/243‑176 (MQ=255)
                                                                                                                                                                                                                ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                                                                                                                                                                                                          <  4:315343‑M1/69‑4 (MQ=255)
                                                                                                                                                                                                                  ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaa                                                          >  3:442681‑M1/1‑64 (MQ=255)
                                                                                                                                                                                                                                   atGCGTGATGCAGATCACACAAACAGCTCATTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaaactgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagtaataatcgaaatgggatgttgcgcacagtcaaaataactcaccataaataatcatctgctataaatagtcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaagg                                         <  2:380464‑M1/275‑229 (MQ=255)
                                                                                                                                                                                                                                    tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                                                                                                                                                   >  4:166923‑M1/1‑46 (MQ=255)
                                                                                                                                                                                                                                      agtGATGAAGATCACAAAAAACTATTAAATACATAACATAAAAGtaaaagtcataattttgtttttagtgtatttcaatctgttaaaaagttattagctacgctaacaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcaggcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaa                                      <  4:407007‑M1/274‑232 (MQ=255)
                                                                                                                                                                                                                                        tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctag                                                                                                                                                                                                               <  2:166923‑M1/104‑63 (MQ=255)
                                                                                                                                                                                                                                                  cacacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaaccaattaaaaacaaaaaaaggcaaaaatcaacttaa                          >  4:27587‑M1/1‑32 (MQ=255)
                                                                                                                                                                                                                                                            acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaa                <  1:442681‑M1/275‑254 (MQ=255)
                                                                                                                                                                                                                                                            acTCAAATACTGAACAGAAAATtataagtcatacttttgttttgggtgtagtgcaatctgataaaaaggtcttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacaattaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaa                <  3:4597‑M1/275‑254 (MQ=255)
                                                                                                                                                                                                                                                            aataaattacTTAACATAAATGtagaagtcatactttagttttgggtgtatttcaatctgtaaaaaagttattcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaa                <  2:27587‑M1/271‑254 (MQ=255)
                                                                                                                                                                                                                                                              tCAATTACTTACCATAAATGtataagtcatacttttgttttgggtgtatttacatctgttaaaaagtttttcgctacgctagcaagcaaaactgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaactaatcatctgatataaataatcactttcatgcaataccagataagctatttttaaacaaacacttaccgcacaacaaaccaattaaatacaaaaaaaggaaacaatcaacttaatgttaatgaaat              >  2:561852‑M1/1‑20 (MQ=255)
                                                                                                                                                                                                                                                                          cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgttttacatata  >  1:506412‑M1/1‑8 (MQ=255)
                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                           
TATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACG  >  NC_000913/1978229‑1978769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.