| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3982351 = | 95 (0.920) | 3 (0.030) | 3/250 | NT | 3.2% | intergenic (+79/‑24) | yifK/argX | putative APC family amino acid transporter/tRNA‑Arg |
| ? | NC_000913 | 3982397 = | 88 (0.890) | noncoding (23/77 nt) | argX | tRNA‑Arg | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAAATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3982504‑3982351‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggataGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTG > NC_000913/3982397‑3982543 CAAATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGT > 1:899222/1‑149 AAATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGGGCTACGGGCGCTTAGCGCCGTTGCGGGGGTG < 3:75057/149‑1 AAATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTG > 2:54253/1‑149 AATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGG < 3:701344/149‑1 ATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGA < 1:54253/149‑1 ATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGA < 4:459761/149‑1 ATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGA < 4:441566/149‑1 TCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGAT > 4:175105/1‑149 TATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGAT < 1:130947/136‑1 TATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGAT > 2:130947/1‑136 TAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCATCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGG < 2:624594/102‑1 TAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGG > 1:624594/1‑102 GCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAA > 4:632742/1‑149 TATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCC > 3:249097/1‑109 TATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCC < 4:249097/109‑1 TGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATT < 2:671347/112‑1 TGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATT > 1:671347/1‑112 GGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTAGAGCCCTGGA > 3:78208/1‑149 GGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTAGAGCCCTGGA < 4:140724/149‑1 GATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTAGAGCCCTGGAT < 3:441566/149‑1 TAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTG < 2:432132/149‑1 CAAATCTTGTTACGCGGTATTACTACCACCGCAGCTCAAGCGCCGGGACTAAATGGCGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGCTTAGCGCCGTTGCGGGGGTGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3982504‑3982351‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggataGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTTGAGCTGCGGTGGTAGTAATACCGCGTAACAAGATTTGTAGTGGTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTG > NC_000913/3982397‑3982543 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |