mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 23.1% | 98.7 / 18.7 | 56 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 49 (0.370) | 37/504 | 3.1 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1207805 | 139 (1.000) | 21 (0.160) | 18/488 | 6.8 | 14.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 112 (0.860) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 140 (1.010) | 17 (0.130) | 16/488 | 7.4 | 12.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 115 (0.890) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 730368 = | 110 (0.790) | 5 (0.040) | 5/508 | 12.7 | 4.4% | coding (786/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620045 = | NA (NA) | coding (854/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 6 (0.050) | 3/442 | 13.0 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 3213282 | 188 (1.400) | 10 (0.070) +CGCCG |
4/494 | 13.2 | 5.0% | coding (236/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| ? | NC_000913 | 3213283 = | 190 (1.370) | coding (237/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor | |||||
| * | ? | NC_000913 | 4037216 = | 89 (0.640) | 4 (0.030) | 4/502 | 13.3 | 4.7% | noncoding (76/77 nt) | ileT | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 77 (0.580) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3427065 | 25 (0.180) | 4 (0.030) | 4/502 | 13.3 | 6.8% | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913 | 4037225 = | 85 (0.640) | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | 225468 = | 85 (0.610) | 4 (0.030) | 4/502 | 13.3 | 4.6% | intergenic (+11/‑32) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913 | 4037225 = | 85 (0.640) | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 4162515 | 144 (1.040) | 4 (0.030) | 4/508 | 13.4 | 2.8% | coding (756/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| ? | NC_000913 | = 4162526 | 139 (1.030) | coding (745/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase | |||||