New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 403626	72 (0.390)	4 (0.020)	4/220	NT	5.0%	intergenic (+25/‑77)	psiF/yaiC	PsiF family protein/diguanylate cyclase, cellulose regualtor
	?	NC_000913	= 403636	85 (0.490)					intergenic (+35/‑67)	psiF/yaiC	PsiF family protein/diguanylate cyclase, cellulose regualtor

CTGGCGAAAAAAGTTTGACGCCACAGCAGCAAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/403474‑403626 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtgagcCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGATCATCACCTTTCAGAGATTGTTGTGTTGCTTGATTATTGCATTCGCGCATCTTTTGCTGCTGTGGCGTCA  <  NC_000913/403636‑403489                                                                                                                                                                                                                                                                                                               CTGGCGAAAAAAGTTTGACGCCACAGCAGCAAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGT                                                                                                                                                          <  3:684456/149‑1  TGGCGAAAAAAGTTTGACGCCACAGCAGCAAAAGATGCGCGAATGCAATAATCAAGCAACAGAACAATCTCTGAAAGGTGATGATCGTAATAAGGTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTG                                                                                                                                                         >  4:1803331/1‑149  TGGCGAAAAAAGTTTGACGCCACAGCAGCAAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTG                                                                                                                                                         <  3:670083/149‑1   GGCGAAAAAAGTTTGACGCCACAGCAGCAAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGA                                                                                                                                                        >  3:384744/1‑149   GGCGAAAAAAGTTTGACGCCACAGCAGCAAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGA                                                                                                                                                        >  3:1529675/1‑149              TTTGACGCCACAGCAGCAAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGA                                                                                                                                                        >  3:704005/1‑138              TTTGACGCCACAGCAGCAAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGA                                                                                                                                                        <  4:704005/138‑1                 GACGCCACAGCAGCAAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGG                                                                                                                                                            >  4:422144/1‑131                 GACGCCACAGCAGCAAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGG                                                                                                                                                            <  3:422144/131‑1                               AAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGT                                                                                                                                                          <  3:1192235/119‑1                               AAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGT                                                                                                                                                          >  4:1192235/1‑119                                   GATGCGCGAATGCAATAATCAAGCTACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGAGC                                                                                                                                                      >  2:1716589/1‑119                                   GATGCGCGAATGCAATAATCAAGCTACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGAGC                                                                                                                                                      <  1:1716589/119‑1                                             TGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGT                                                                                                                                                          <  2:1672583/105‑1                                             TGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGT                                                                                                                                                          >  1:1672583/1‑105                                                       AAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGA                                                                                                                                                        <  4:301960/97‑1                                                       AAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGA                                                                                                                                                        >  3:301960/1‑97                                                             CACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGA                                                                                                                                                        <  2:1600385/91‑1                                                             CACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGA                                                                                                                                                        >  1:1600385/1‑91                                                                                                TTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGAGCCATTTTCGTAGCTCACCC                                                                                                                                    >  2:669221/1‑76                                                                                                TTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGAGCCATTTTCGTAGCTCACCC                                                                                                                                    <  1:669221/76‑1                                                                                                                TCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGAGCCATTTTCGTAGCTCA                                                                                                                                       >  2:1574619/1‑57                                                                                                                TCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGAGCCATTTTCGTAGCTCA                                                                                                                                       <  1:1574619/57‑1                                                                                                                                                  GGGTGAGCCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGAT                                                                       <  4:718182/87‑1                                                                                                                                                  GGGTGAGCCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGAT                                                                       >  3:718182/1‑87                                                                                                                                                    GTGAGCCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGATCATCACCTTTCAGAGATTGTTGTGTTGCTTGATTATTGCATTCGCGCATCTTTTGCTGCTGTGG       <  3:52719/149‑1                                                                                                                                                    GTGAGCCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGATCATCACCTTTCAGAGATTGTTGTGTTGCTTGATTATTGCATTCGCGCATCTTTTGCTGCTGTGG       >  4:52719/1‑149                                                                                                                                                     TGAGCCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGATCATCACCTTTCAGAGATTGTTGTGTTGCTTGATTATTGCATTCGCGCATCTTTTGCTGCTGTGGC      <  3:1720081/149‑1                                                                                                                                                       AGCCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGATCATCACCTTTCAGAGATTGTTGTGTTGCTTGATTATTGCATTCGCGCATCTTTTGCTGCTGTGGCGT    >  4:626702/1‑149                                                                                                                                                         CCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGATCATCACCTTTCAGAGATTGTTGTGTTGCTTGATTATTGCATTCGCGCATCTTTTGCTGCTGTGGCGTCA  >  3:1801189/1‑149                                                                                                                                                         CCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGATCATCACCTTTCAGAGATTGTTGTGTTGCTTGATTATTGCATTCGCGCATCTTTTGCTGCTGTGGCGTCA  >  2:861831/1‑149                                                                                                                                                         CCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGATCATCACCTTTCAGAGATTGTTGTGTTGCTTGA                                       >  2:586262/1‑112                                                                                                                                                         CCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGATCATCACCTTTCAGAGATTGTTGTGTTGCTTGA                                       <  1:586262/112‑1                                                                                                                                                                                                                                                                                                               CTGGCGAAAAAAGTTTGACGCCACAGCAGCAAAAGATGCGCGAATGCAATAATCAAGCAACACAACAATCTCTGAAAGGTGATGATCGTAATAAGTTTATGAGTGCCTGCCTCAAGAAAGCCGCCTGATACCTGATAGTGCTAACGGGTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/403474‑403626 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtgagcCATTTTCGTAGCTCACCCGTTAGCACTATCAGGTATCAGGCGGCTTTCTTGAGGCAGGCACTCATAAACTTATTACGATCATCACCTTTCAGAGATTGTTGTGTTGCTTGATTATTGCATTCGCGCATCTTTTGCTGCTGTGGCGTCA  <  NC_000913/403636‑403489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.