New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1937563	88 (0.470)	8 (0.050)	4/218	NT	8.2%	intergenic (+42/‑86)	yebK/pykA	putative DNA‑binding transcriptional regulator/pyruvate kinase II
	?	NC_000913	= 1937592	99 (0.580)					intergenic (+71/‑57)	yebK/pykA	putative DNA‑binding transcriptional regulator/pyruvate kinase II

CAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1937406‑1937563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgaatgaAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTCGTATAAGATTAGGACAGTGACAGTCGTTTTTAGCGATCGTCACTTAAATTAAGTAACTGCTTATCAAAACGCGATTCCTTCAGCGCTTCTTTGACCCGCTTCA  <  NC_000913/1937592‑1937448                                                                                                                                                                                                                                                                                                                 CAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACA                                                                                                                                                            >  4:1044139/1‑149   GGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATC                                                                                                                                                          <  1:59548/149‑1    GATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCC                                                                                                                                                         >  2:297719/1‑149    GATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCC                                                                                                                                                         >  2:84941/1‑149       TTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAA                                                                                                                                                      <  4:599916/149‑1       TTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAA                                                                                                                                                      <  3:1785941/149‑1          CTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGA                                                                                                                                                   <  1:156218/149‑1                                           TGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCAT                                                                                                                  >  1:1670207/1‑149                                           TGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCAT                                                                                                                  >  1:729274/1‑149                                                CGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGA                                                                                                             <  2:729274/149‑1                                                CGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGA                                                                                                             <  2:1670207/149‑1                                                                             TTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTC                                                                                                         <  3:1099982/124‑1                                                                             TTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTC                                                                                                         <  3:441057/124‑1                                                                             TTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTC                                                                                                         >  4:1099982/1‑124                                                                             TTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTC                                                                                                         >  4:441057/1‑124                                                                                                                                                     ATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTCGTATAAGATTAGGACAGTGACAGTCGTTTTTAGCGA                                                                     >  2:325252/1‑88                                                                                                                                                     ATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTCGTATAAGATTAGGACAGTGACAGTCGTTTTTAGCGA                                                                     <  1:325252/88‑1                                                                                                                                                          AATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTCGTATAAGATTAGGACAGTGACAGTCGTTTTTAGCGATCGTCACTTAAATTAAGTAACTGCTTATCAAAACGCGATTCCTTCAGCGCTTCTTTGACCCGCTTC   >  4:1439291/1‑149                                                                                                                                                          AATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTCGTATAAGATTAGGACAGTGACAGTCGTTTTTAGCGATCGTCACTTAAA                                                         >  3:1630459/1‑95                                                                                                                                                          AATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTCGTATAAGATTAGGACAGTGACAGTCGTTTTTAGCGATCGTCACTTAAA                                                         <  4:1630459/95‑1                                                                                                                                                           ATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTCGTATAAGATTAGGACAGTGACAGTCGTTTTTAGCGATCGTCACTTAAATTAAGTAACTGCTTATCAAAACGCGATTCCTTCAGCGCTTCTTTGACCCGCTTCA  >  3:718428/1‑149                                                                                                                                                                                                                                                                                                                 CAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1937406‑1937563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgaatgaAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTCGTATAAGATTAGGACAGTGACAGTCGTTTTTAGCGATCGTCACTTAAATTAAGTAACTGCTTATCAAAACGCGATTCCTTCAGCGCTTCTTTGACCCGCTTCA  <  NC_000913/1937592‑1937448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.