| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2232735 | NA (NA) | 5 (0.030) | 6/226 | NT | NA | intergenic (+7/‑143) | cdd/sanA | cytidine/deoxycytidine deaminase/DUF218 superfamily vancomycin high temperature exclusion protein |
| ? | NC_000913 | = 2232765 | NA (NA) | noncoding (30/34 nt) | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TCAAGGGTTATGATTACCCGGATATCCAGCGCGCGGTTCTGGCAGAAAAAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2232589‑2232735‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCCACTGAATCAACGGCGCATCGGCTTTTTCTGCCAGAACCGCGCGCTGGA < NC_000913/2232765‑2232613 TCAAGGGTTATGATTACCCGGATATCCAGCGCGCGGTTCTGGCAGAAAAAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGC > 4:411010/1‑149TCAAGGGTTATGATTACCCGGATATCCAGCGCGCGGTTCTGGCAGAAAAAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGC > 4:1475688/1‑149TCAAGGGTTATGATTACCCGGATATCCAGCGCGCGGTTCTGGCAGAAAAAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGC > 3:833742/1‑149 TCCAGCGCGCGGTTCTGGCAGAAAAAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATC < 2:1426166/149‑1 AAAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAG < 1:80706/135‑1 ACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATC < 1:704172/93‑1 ACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATC > 2:704172/1‑93 CTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGGCA < 3:440636/86‑1 CTGGTGCCGGATGCGGCGTGAACGCCTTGTCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCCACTGAATCAACGGCGCATCGGCTTT < 2:80706/135‑1 TGCCGGATGCGGCGTGAACGCCTTGTCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAG < 4:440636/86‑1 GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCCACTGAATCAACGGCGCATCGGCTTTTTCTGCCAGAACCGCGCGC > 4:833742/1‑149 CCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCCACTGAATCAACGGCGCATCGGCTTTTTCTGCCAGAACCGCGCGCT > 3:754271/1‑149 CGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCCACTGAATCAACGGCGCATCGGCTTTTTCTGCCAGAACCGCGCGCTG < 4:1464217/149‑1 CGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCCACTGAATCAACGGCGCATCGGCT < 2:331315/126‑1 CGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCCACTGAATCAACGGCGCATCGGCT > 1:331315/1‑126 GGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCCACTGAATCAACGGCGCATCGGCTTTTTCTGCCAGAACCGCGCGCTGG < 1:871753/149‑1 GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCCACTGAATCAACGGCGCATCGGCTTTTTCTGCCAGAACCGCGCGCTGGA > 1:56430/1‑149 GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCCACTGAATCAACGGCGCATCGGCTTTTTCTGCCAGAACCGCGCGCTGGA > 1:1324340/1‑149 TCAAGGGTTATGATTACCCGGATATCCAGCGCGCGGTTCTGGCAGAAAAAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2232589‑2232735‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCCACTGAATCAACGGCGCATCGGCTTTTTCTGCCAGAACCGCGCGCTGGA < NC_000913/2232765‑2232613 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |