New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2884559 =	138 (0.740)	14 (0.080)	12/228	NT	9.6%	coding (2661/2667 nt)	ygcB	Cascade complex anti‑viral R‑loop helicase‑annealase Cas3
	?	NC_000913	2884597 =	131 (0.730)					coding (2623/2667 nt)	ygcB	Cascade complex anti‑viral R‑loop helicase‑annealase Cas3

TGGAAACGTAGTTTTTCTGAAGTAGTAGATGAAGATGGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2884711‑2884559 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcccCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAG  >  NC_000913/2884597‑2884744                                                                                                                                                                                                                                                                                                               TGGAAACGTAGTTTTTCTGAAGTAGTAGATGAAGATGGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAA                                                                                                                                                          >  4:816738/1‑149  GGAAACGTAGTTTTTCTGAAGTAGTAGATGAAGATGGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAAT                                                                                                                                                         <  1:892440/149‑1   GAAACGTAGTTTTTCTGAAGTAGTAGATGAAGATGGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATC                                                                                                                                                        >  1:1616339/1‑149     AACGTAGTTTTTCTGAAGTAGTAGATGAAGATGGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCC                                                                                                                                                      <  3:1004869/149‑1     AACGTAGTTTTTCTGAAGTAGTAGATGAAGATGGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCC                                                                                                                                                      >  2:288905/1‑149                                                         GAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCC                                                                                                                                                      >  1:1562690/1‑97                                                         GAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCC                                                                                                                                                      <  2:1562690/97‑1                                                                                    GCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCC                                                                                                                                                      <  4:177348/70‑1                                                                                    GCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCC                                                                                                                                                      >  3:177348/1‑70                                                                                                            CTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCT                                                                                                <  1:631512/100‑1                                                                                                            CTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCT                                                                                                >  2:631512/1‑100                                                                                                             TATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCC                                                                                          <  2:1251061/105‑1                                                                                                             TATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCC                                                                                          >  1:1251061/1‑105                                                                                                                    GGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTT                                       >  3:1056318/1‑149                                                                                                                      GATGAAGGGATGACCAGAGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCAT                                                                                                         >  4:562630/1‑79                                                                                                                      GATGAAGGGATGACCAGAGTCACCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCAT                                                                                                         <  3:562630/79‑1                                                                                                                       ATGAAGGGATGACCAGAGTCATCCCTGCAAATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCC                                    <  4:1056318/149‑1                                                                                                                       ATGAAGGGATGACCAGAGTCATCCCTGCAAATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCC                                    >  3:1808736/1‑149                                                                                                                         GAAGGGATGACCAGAGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTAC                                                           <  2:1098237/122‑1                                                                                                                         GAAGGGATGACCAGAGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGCTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTAC                                                           >  1:1098237/1‑122                                                                                                                           AGGGATGACCAGAGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGA                              >  2:1391642/1‑149                                                                                                                            GGGATGACCAGAGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCC                                                                                     >  2:564579/1‑93                                                                                                                            GGGATGACCAGAGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCC                                                                                     <  1:564579/93‑1                                                                                                                                                TGCAAATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATT           <  4:1808736/149‑1                                                                                                                                                        CCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAA   <  1:1113521/149‑1                                                                                                                                                        CCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAA   >  1:1184957/1‑149                                                                                                                                                         CCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAG  >  4:1485277/1‑149                                                                                                                                                         CCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCCGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAG  >  4:878270/1‑149                                                                                                                                                                                                                                                                                                               TGGAAACGTAGTTTTTCTGAAGTAGTAGATGAAGATGGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTGCAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2884711‑2884559 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcccCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAG  >  NC_000913/2884597‑2884744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.