BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	5590 =	NA (NA)	10 (0.060)	8/224	NT	15.2%	noncoding (26/105 nt)	RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	2304478 =	56 (0.320)	10 (0.060)	8/224	NT	15.2%	noncoding (62/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

Only 100 of 101 total aligned reads displayed.

TACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCAT  >  NC_000913/5442‑5738

tACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTa                                                                                                                                                      >  3:908259/1‑149 (MQ=255)

 acacGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                                                                     >  4:785345/1‑149 (MQ=255)

   acGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCa                                                                                                                                                   <  2:71762/149‑1 (MQ=255)

    cGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAg                                                                                                                                                  <  3:388155/149‑1 (MQ=255)

                    ccgcGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTg                                                                                                                                  <  3:698244/149‑1 (MQ=255)

                          caccaTAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAatat                                                                                                                            >  1:102767/1‑149 (MQ=255)

                              aTAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTg                                                                                                                        <  1:749671/149‑1 (MQ=255)

                                   atcaggcaaccggctcgggcgttggatgtcggatgcggcgtgaccgccttgtctgacctacggggtgccgcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATc                                                                                                                                                    >  4:1574215‑M1/114‑116 (MQ=255)

                                   atcaggcaaccggctcgggcgttggatgtcggatgcggcgtgaccgccttgtctgacctacggggtgccgcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATc                                                                                                                                                    >  4:690666‑M1/114‑116 (MQ=255)

                                   atcaggcaaccggctcgggcgttggatgtcggatgcggcgtgaccgccttgtctgacctacggggtgccgcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATc                                                                                                                                                    <  3:690666‑M1/3‑1 (MQ=255)

                                   atcaggcaaccggctcgggcgttggatgtcggatgcggcgtgaccgccttgtctgacctacggggtgccgcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATc                                                                                                                                                    <  3:1574215‑M1/3‑1 (MQ=255)

                                    tcaggcaaccggctcgggcgttggatgtcggatgcggcgtgaccgccttgtctgacctacggggtgccgcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg                                                                                                                                                  >  3:960431‑M1/113‑117 (MQ=255)

                                     aGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGc                                                                                                                 >  4:724943/1‑149 (MQ=255)

                                     aGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGc                                                                                                                 >  1:1785147/1‑149 (MQ=255)

                                        tcctcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCa                                                                                                                >  4:657620/1‑147 (MQ=255)

                                        tcctcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCa                                                                                                                <  3:657620/147‑1 (MQ=255)

                                        tcctcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATg                                                                                                              <  1:1173316/149‑1 (MQ=255)

                                        tcctcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATg                                                                                                              <  3:1839668/149‑1 (MQ=255)

                                          ctcATGATCATGACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAatatat                                                                                                                          >  3:1114575/1‑135 (MQ=255)

                                          ctcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAatatat                                                                                                                          <  4:1114575/135‑1 (MQ=255)

                                           tcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCa                                                                                                                                                   >  3:310645/1‑109 (MQ=255)

                                           tcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCa                                                                                                                                                   <  4:310645/109‑1 (MQ=255)

                                           tcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAg                                                                                                                                                  >  1:399166/1‑110 (MQ=255)

                                           tcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAg                                                                                                                                                  <  2:399166/110‑1 (MQ=255)

                                           tcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAAt                                                                                                                                      <  2:865369/122‑1 (MQ=255)

                                           tcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAAt                                                                                                                                      >  1:865369/1‑122 (MQ=255)

                                             aTGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCtttt                                                                                                         <  2:1785147/149‑1 (MQ=255)

                                              tGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTg                                                                                                        >  3:1299240/1‑149 (MQ=255)

                                               gctcgggcgttggatgtcggatgcggcgtgaccgccttgtctgacctacggggtgccgcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCa                                                                                                                                                   <  1:293699‑M1/4‑1 (MQ=255)

                                               gctcgggcgttggatgtcggatgcggcgtgaccgccttgtctgacctacggggtgccgcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCa                                                                                                                                                   >  2:293699‑M1/102‑105 (MQ=255)

                                                atcatcACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAc                                                                                                                                            >  3:1714135/1‑111 (MQ=255)

                                                atcatcACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAc                                                                                                                                            <  4:1714135/111‑1 (MQ=255)

                                                atcatcACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTa                                                                                                      <  4:1299240/149‑1 (MQ=255)

                                                atcatcACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTa                                                                                                      >  2:1827914/1‑149 (MQ=255)

                                                 tcatcaCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAg                                                                                                     >  3:1436009/1‑149 (MQ=255)

                                                    tcaCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCa                                                                                                  >  3:1088200/1‑149 (MQ=255)

                                                    tcaCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCa                                                                                                  <  1:1605499/149‑1 (MQ=255)

                                                    tcaCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCa                                                                                                  >  2:1605499/1‑149 (MQ=255)

                                                     caCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAg                                                                                                 <  4:908259/149‑1 (MQ=255)

                                                             tCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGc                                                                                         <  1:1827914/149‑1 (MQ=255)

                                                                 ggatgcggcgtgaccgccttgtctgacctacggggtgccgcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg                                                                                                                                                  >  3:19055‑M1/84‑88 (MQ=255)

                                                                 ggatgcggcgtgaccgccttgtctgacctacggggtgccgcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg                                                                                                                                                  <  4:19055‑M1/5‑1 (MQ=255)

                                                                  gTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCa                                                                                    <  2:102767/149‑1 (MQ=255)

                                                                      aGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATa                                                                                             >  1:1661287/1‑136 (MQ=255)

                                                                      aGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATa                                                                                             <  2:1661287/136‑1 (MQ=255)

                                                                      aGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCAcgcc                                                                                <  3:724943/149‑1 (MQ=255)

                                                                      aGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCAcgcc                                                                                <  3:1513851/149‑1 (MQ=255)

                                                                        gCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCAcgccgc                                                                              >  1:577985/1‑149 (MQ=255)

                                                                           aaCATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAgg                                                                                                    <  2:313410/124‑1 (MQ=255)

                                                                           aaCATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAgg                                                                                                    >  1:313410/1‑124 (MQ=255)

                                                                                   cGCTAAATGACAAATGCCGGGTAACAATACGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTg                                                                   >  2:1329361/1‑149 (MQ=255)

                                                                                           gACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCAc                                                                                   <  4:910980/125‑1 (MQ=255)

                                                                                           gACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCAc                                                                                   >  3:910980/1‑125 (MQ=255)

                                                                                            aCAAATGCCGGGTAACAATACGGCAGTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAAc                                                          <  4:1436009/149‑1 (MQ=255)

                                                                                              aaaTGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTa                                                                                                      >  1:866577/1‑103 (MQ=255)

                                                                                              aaaTGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTa                                                                                                      <  2:866577/103‑1 (MQ=255)

                                                                                              aaaTGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGAc                                                                 <  3:1724725/140‑1 (MQ=255)

                                                                                              aaaTGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGAc                                                                 >  4:1724725/1‑140 (MQ=255)

                                                                                                     gggTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCtttt                                                                                                         <  3:1574128/93‑1 (MQ=255)

                                                                                                     gggTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCtttt                                                                                                         >  4:1574128/1‑93 (MQ=255)

                                                                                                      ggTAACAATACGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACgctgc                                                <  1:1329361/149‑1 (MQ=255)

                                                                                                        tAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTc                                              <  4:1088200/149‑1 (MQ=255)

                                                                                                            aaTCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTg                                                                   >  1:510769/1‑124 (MQ=255)

                                                                                                            aaTCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTg                                                                   <  2:510769/124‑1 (MQ=255)

                                                                                                                cGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGc                                                                                         <  1:556910/98‑1 (MQ=255)

                                                                                                                cGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGc                                                                                         >  2:556910/1‑98 (MQ=255)

                                                                                                                 ggCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGa                                                                                               >  2:1635430/1‑91 (MQ=255)

                                                                                                                 ggCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGa                                                                                               <  1:1635430/91‑1 (MQ=255)

                                                                                                                 ggCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCa                                                             <  2:125008/125‑1 (MQ=255)

                                                                                                                 ggCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCa                                                             >  1:125008/1‑125 (MQ=255)

                                                                                                                         gcgcCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCaaa                                                           >  3:364861/1‑119 (MQ=255)

                                                                                                                         gcgcCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCaaa                                                           <  4:364861/119‑1 (MQ=255)

                                                                                                                           gcctgataagacgcgccagcgtcgcATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAg                                          <  2:1686497‑M1/109‑1 (MQ=255)

                                                                                                                           gcctgataagacgcgccagcgtcgcATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAg                                          >  1:1686497‑M1/26‑134 (MQ=255)

                                                                                                                            cctgataagacgcgccagcgtcgcATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGtt                          >  1:850167‑M1/25‑149 (MQ=255)

                                                                                                                            cctgataagacgcgccagcgtcgcATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGtt                          <  2:850167‑M1/125‑1 (MQ=255)

                                                                                                                             ctgataagacgcgccagcgtcgcATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCAt                                                                                                               <  1:1606251‑M1/40‑1 (MQ=255)

                                                                                                                             ctgataagacgcgccagcgtcgcATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCAt                                                                                                               >  2:1606251‑M1/24‑63 (MQ=255)

                                                                                                                             ctgataagacgcgccagcgtcgcATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGa                                                                  >  2:17650‑M1/24‑108 (MQ=255)

                                                                                                                             ctgataagacgcgccagcgtcgcATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCaaa                                                           >  2:1446934‑M1/24‑115 (MQ=255)

                                                                                                                             ctgataagacgcgccagcgtcgcATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCaaa                                                           <  1:1446934‑M1/92‑1 (MQ=255)

                                                                                                                             ctgataagacgcgccagcgtcgcATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTCGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGa                                                                  <  1:17650‑M1/85‑1 (MQ=255)

                                                                                                                             cTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTaa                                                      <  4:487871/120‑1 (MQ=255)

                                                                                                                             cTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTaa                                                      >  3:487871/1‑120 (MQ=255)

                                                                                                                                         tGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTgga             >  2:749151/1‑149 (MQ=255)

                                                                                                                                          ggCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACTCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTggag            >  4:1361411/1‑149 (MQ=255)

                                                                                                                                           gcgcGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTggagg           >  1:1875832/1‑149 (MQ=255)

                                                                                                                                               gTCTTATCAGGCCTAGGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATc       >  4:1402985/1‑149 (MQ=255)

                                                                                                                                               gTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCAtt                                                                    <  3:1853394/88‑1 (MQ=255)

                                                                                                                                               gTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCAtt                                                                    >  4:1853394/1‑88 (MQ=255)

                                                                                                                                               gTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATc       >  2:1715224/1‑149 (MQ=255)

                                                                                                                                                tCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGttt                                     >  3:1376949/1‑118 (MQ=255)

                                                                                                                                                tCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGttt                                     <  4:1376949/118‑1 (MQ=255)

                                                                                                                                                tCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCa                             >  2:366852/1‑126 (MQ=255)

                                                                                                                                                tCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCa                             <  1:366852/126‑1 (MQ=255)

                                                                                                                                                 cTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCtt     <  3:1361411/149‑1 (MQ=255)

                                                                                                                                                  ttATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTtc    >  1:1879986/1‑149 (MQ=255)

                                                                                                                                                    ATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTtcat  >  1:1715224‑M1/1‑149 (MQ=255)

                                                                                                                                                    ATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTtcat  >  3:785345‑M1/1‑149 (MQ=255)

                                                                                                                                                    ATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTtcat  <  2:1021923‑M1/149‑1 (MQ=255)

TACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCAT  >  NC_000913/5442‑5738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.