BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	5590 =	NA (NA)	10 (0.060)	8/224	NT	15.2%	noncoding (26/105 nt)	RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	2304478 =	56 (0.320)	10 (0.060)	8/224	NT	15.2%	noncoding (62/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

Only 100 of 102 total aligned reads displayed.

TGTAGATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCC  >  NC_000913/2304330‑2304616

tGTAGATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATg                                                                                                                                            <  4:915639/149‑1 (MQ=255)

tGTAGATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATg                                                                                                                                            <  3:1858335/149‑1 (MQ=255)

  tAGATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCg                                                                                                                                          >  4:477310/1‑149 (MQ=255)

      tgtgAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGc                                                                                                                                      >  1:146462/1‑149 (MQ=255)

         gAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTgg                                                                                                                                   >  2:168104/1‑149 (MQ=255)

          aaGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGgc                                                                                                                                  <  1:135475/149‑1 (MQ=255)

            gTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGgcgc                                                                                                                                >  3:1310940/1‑149 (MQ=255)

             tACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGcgcg                                                                                                                               >  2:1248666/1‑149 (MQ=255)

               ccGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAGCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTc                                                                                                                             >  4:1340057/1‑149 (MQ=255)

               ccGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTc                                                                                                                             <  3:477310/149‑1 (MQ=255)

                cgcgTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAGCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCt                                                                                                                            <  3:1340057/149‑1 (MQ=255)

                 gcgTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCtt                                                                                                                           >  2:862153/1‑149 (MQ=255)

                   gTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                                         <  3:1691012/149‑1 (MQ=255)

                     cTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCa                                                                                                                       <  4:1310940/149‑1 (MQ=255)

                       ggAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg                                                                                                                     >  3:1748033/1‑149 (MQ=255)

                       ggAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg                                                                                                                     <  2:639183/149‑1 (MQ=255)

                       ggAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg                                                                                                                     >  2:919731/1‑149 (MQ=255)

                       aactggtgtttaaacgctacgagcagcgttaagtttgcagtcaatgccggatgcggcgtgaacgccttatcctgcctacaaaagcatgcagattcaatatattgcagaattaacgtaggcctgatGCGACGCTGGCGCGTCTTATCAgg                                                                                                                     <  2:850167‑M2/24‑1 (MQ=255)

                       aactggtgtttaaacgctacgagcagcgttaagtttgcagtcaatgccggatgcggcgtgaacgccttatcctgcctacaaaagcatgcagattcaatatattgcagaattaacgtaggcctgatGCGACGCTGGCGCGTCTTATCAgg                                                                                                                     >  1:850167‑M2/126‑149 (MQ=255)

                                    gaAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGgc                                                                                                                                  >  4:499579/1‑123 (MQ=255)

                                    gaAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCtgt                                                                                                        <  4:1748033/149‑1 (MQ=255)

                                    gaAAATTGACAACGCGGTAGTTCGCTAAACCGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGgc                                                                                                                                  <  3:499579/123‑1 (MQ=255)

                                     aaaaTTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCtgtg                                                                                                       <  2:895771/149‑1 (MQ=255)

                                     aaaaTTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCtgtg                                                                                                       >  2:1498070/1‑149 (MQ=255)

                                       ctacgagcagcgttaagtttgcagtcaatgccggatgcggcgtgaacgccttatcctgcctacaaaagcatgcagattcaatatattgcagaattaacgtaggcctgatGCGACGCTGGCGCGTCTTATCAGGc                                                                                                                    >  1:1686497‑M2/110‑134 (MQ=255)

                                       ctacgagcagcgttaagtttgcagtcaatgccggatgcggcgtgaacgccttatcctgcctacaaaagcatgcagattcaatatattgcagaattaacgtaggcctgatGCGACGCTGGCGCGTCTTATCAGGc                                                                                                                    <  2:1686497‑M2/25‑1 (MQ=255)

                                           gACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGc                                                                                                 <  1:168104/149‑1 (MQ=255)

                                           gACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGc                                                                                                 >  3:87252/1‑149 (MQ=255)

                                           gACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGc                                                                                                 <  1:919731/149‑1 (MQ=255)

                                                     atcaggcaaccggctcggacgttggatgtcggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtagGCCTGATGCGACGCTGGCGCGTCTTATCAgg                                                                                                                     >  4:1705728‑M1/89‑119 (MQ=255)

                                                     atcaggcaaccggctcggacgttggatgtcggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtagGCCTGATGCGACGCTGGCGCGTCTTATCAgg                                                                                                                     <  3:1705728‑M1/31‑1 (MQ=255)

                                                      tcaggcaaccggctcgggcgttagatgttggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtagGCCTGATGCGACGCTGGCGCGTCTTATCAg                                                                                                                      <  3:141430‑M1/30‑1 (MQ=255)

                                                      tcaggcaaccggctcgggcgttagatgttggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtagGCCTGATGCGACGCTGGCGCGTCTTATCAg                                                                                                                      >  4:141430‑M1/88‑117 (MQ=255)

                                                      aGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTa                                                                                      <  2:146462/149‑1 (MQ=255)

                                                      aGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTa                                                                                      <  1:862153/149‑1 (MQ=255)

                                                      aGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTa                                                                                      <  4:87252/149‑1 (MQ=255)

                                                      aGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTa                                                                                      <  1:533043/149‑1 (MQ=255)

                                                       gTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAg                                                                                     >  4:1638399/1‑149 (MQ=255)

                                                        tttgcagtcaatgccggatgcggcgtgaacgccttatcctgcctacaaaagcatgcagattcaatatattgcagaattaacgtaggcctgatGCGACGCTGGCGCGTCTTATCAg                                                                                                                      <  1:1446934‑M2/23‑1 (MQ=255)

                                                        tttgcagtcaatgccggatgcggcgtgaacgccttatcctgcctacaaaagcatgcagattcaatatattgcagaattaacgtaggcctgatGCGACGCTGGCGCGTCTTATCAg                                                                                                                      >  2:1446934‑M2/93‑115 (MQ=255)

                                                        ttCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGG                                                                                    >  3:345316‑M1/1‑149 (MQ=255)

                                                        ttCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGG                                                                                    <  1:1809948‑M1/149‑1 (MQ=255)

                                                        ttCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGG                                                                                    >  4:1721209‑M1/1‑149 (MQ=255)

                                                           gCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCa                                                                                 >  3:1665949/1‑149 (MQ=255)

                                                           gCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCa                                                                                 <  4:345316/149‑1 (MQ=255)

                                                           gCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCa                                                                                 <  3:1721209/149‑1 (MQ=255)

                                                           gCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCa                                                                                 <  1:1498070/149‑1 (MQ=255)

                                                           gCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCCACGCTGGCGCGTc                                                                                                                             <  4:1083692/105‑1 (MQ=255)

                                                           gCTAAACTGCCATGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCCACGCTGGCGCGTc                                                                                                                             >  3:1083692/1‑105 (MQ=255)

                                                             tAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                                                                                                     <  1:1059735/127‑1 (MQ=38)

                                                             tAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                                                                                                     >  2:1059735/1‑127 (MQ=38)

                                                               tcaatgccggatgcggcgtgaacgccttatcctgcctacgaaagcatgcagattcaatatattgcagaattaacgtaggcctgatGCGACGCTGGCGCGTCTTATCAg                                                                                                                      <  1:17650‑M2/23‑1 (MQ=255)

                                                               tcaatgccggatgcggcgtgaacgccttatcctgcctacaaaagcatgcagattcaatatattgcagaattaacgtaggcctgatGCGACGCTGGCGCGTCTTATCAg                                                                                                                      >  2:17650‑M2/86‑108 (MQ=255)

                                                                 cTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAg                                                                           <  3:1638399/149‑1 (MQ=255)

                                                                 cTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAg                                                                           >  1:310710/1‑149 (MQ=255)

                                                                   gCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGc                                                                         <  2:310710/149‑1 (MQ=255)

                                                                    ccGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCg                                                                        <  1:1248666/149‑1 (MQ=255)

                                                                    ccGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCg                                                                        <  1:1442068/149‑1 (MQ=255)

                                                                     cGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCgg                                                                       <  4:1665949/149‑1 (MQ=40)

                                                                         gttggatgtcggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtagGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                                         <  4:244218‑M1/27‑1 (MQ=255)

                                                                         gttggatgtcggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtagGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                                         >  3:244218‑M1/69‑95 (MQ=255)

                                                                          ttagatgttggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtagGCCTGATGCGACGCTGGCGCGTCTTATc                                                                                                                        <  2:376300‑M1/28‑1 (MQ=255)

                                                                          ttagatgttggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtagGCCTGATGCGACGCTGGCGCGTCTTATc                                                                                                                        >  1:376300‑M1/68‑95 (MQ=255)

                                                                          ttagatgttggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtagGCCTGATAAGACGCTGGCGCGTCTTa                                                                                                                          <  1:1777904‑M1/26‑1 (MQ=255)

                                                                          ttagatgttggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtagGCCTGATAAGACGCTGGCGCGTCTTa                                                                                                                          >  2:1777904‑M1/68‑93 (MQ=255)

                                                                               tgttggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtagGCCTGTTGCGACGCTGGCGCGTCTTa                                                                                                                          >  1:82624‑M1/63‑88 (MQ=255)

                                                                                  aCCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATcc                                                          >  1:318200/1‑149 (MQ=255)

                                                                                            tCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGa                                                        >  4:1622371/1‑141 (MQ=255)

                                                                                            tCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAAGTCAGACAAGGCGGTCACGCCGCATCCGa                                                        <  3:1622371/141‑1 (MQ=255)

                                                                                                aCAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGa                                                        >  2:448165/1‑137 (MQ=255)

                                                                                                aCAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGa                                                        <  1:448165/137‑1 (MQ=255)

                                                                                                  aaGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGa                                          >  2:176318/1‑149 (MQ=255)

                                                                                                        ccagcgtcgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGt                                    >  4:708386/8‑149 (MQ=255)

                                                                                                         cagcgtcgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGtt                                   <  3:708386/143‑1 (MQ=255)

                                                                                                           aCGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGc                                 <  2:318200/149‑1 (MQ=255)

                                                                                                            atgcagattcaatatattgcagaattaacgtaggcctgatGCGACGCTGGCGCGTCTTATCAg                                                                                                                      <  1:1606251‑M2/23‑1 (MQ=255)

                                                                                                            atgcagattcaatatattgcagaattaacgtaggcctgatGCGACGCTGGCGCGTCTTATCAg                                                                                                                      >  2:1606251‑M2/41‑63 (MQ=255)

                                                                                                                 cATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATg                           <  1:176318/149‑1 (MQ=255)

                                                                                                                  aTCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCggatgcggcgtaaccgccttat                                                            <  2:571967‑M1/115‑23 (MQ=255)

                                                                                                                  aTCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCggatgcggcgtaaccgccttat                                                            >  1:571967‑M1/1‑93 (MQ=255)

                                                                                                                  aTCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGa                                                        >  1:601789/1‑119 (MQ=255)

                                                                                                                  aTCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGa                                                        <  2:601789/119‑1 (MQ=255)

                                                                                                                  aTCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGc                          >  1:1504543/1‑149 (MQ=255)

                                                                                                                        cATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTggatgcggcgtaaccgccttatc                                                           <  2:784324‑M1/110‑24 (MQ=255)

                                                                                                                         aTCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTATGTCggatgcggcgtaaccgccttatc                                                           <  4:428493‑M1/109‑24 (MQ=255)

                                                                                                                         aTCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTATGTCggatgcggcgtaaccgccttatc                                                           >  3:428493‑M1/1‑86 (MQ=255)

                                                                                                                            cAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCggatgcggcgtaaccgccttatccga                                                        <  1:452399‑M1/109‑27 (MQ=255)

                                                                                                                            cAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCCGTGAAGTGCTCCACCCCGTAGGTCggatgcggcgtaaccgccttatccga                                                        >  2:452399‑M1/1‑83 (MQ=255)

                                                                                                                             aaCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGAc                                                       >  3:847704/1‑109 (MQ=255)

                                                                                                                             aaCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGAc                                                       <  4:847704/109‑1 (MQ=255)

                                                                                                                                          gTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGcc  >  2:625046/1‑149 (MQ=255)

                                                                                                                                               ctgatGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATcc                                                          <  4:19055‑M2/83‑1 (MQ=255)

                                                                                                                                               ctgatGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATcc                                                          >  3:19055‑M2/6‑88 (MQ=255)

                                                                                                                                               ctgatGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGa                             >  3:960431‑M2/6‑117 (MQ=255)

                                                                                                                                                tgatGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGc                                        >  2:293699‑M2/5‑105 (MQ=255)

                                                                                                                                                tgatGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGc                                        <  1:293699‑M2/101‑1 (MQ=255)

                                                                                                                                                 gatGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGAt                            >  4:1574215‑M2/4‑116 (MQ=255)

                                                                                                                                                 gatGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGAt                            <  3:1574215‑M2/113‑1 (MQ=255)

                                                                                                                                                 gatGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGAt                            >  4:690666‑M2/4‑116 (MQ=255)

                                                                                                                                                 gatGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGAt                            <  3:690666‑M2/113‑1 (MQ=255)

TGTAGATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCC  >  NC_000913/2304330‑2304616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.