BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3920303 =	127 (0.680)	10 (0.060)	9/228	NT	7.6%	coding (101/534 nt)	atpH	F1 sector of membrane‑bound ATP synthase, delta subunit
*	?	NC_000913	3920328 =	122 (0.680)	10 (0.060)	9/228	NT	7.6%	coding (76/534 nt)	atpH	F1 sector of membrane‑bound ATP synthase, delta subunit

Only 100 of 151 total aligned reads displayed.

CCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCG  >  NC_000913/3920163‑3920451

ccATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGc                                                                                                                                              >  2:317803/1‑149 (MQ=255)

  aTAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCAt                                                                                                                                            >  3:643262/1‑149 (MQ=255)

          aaTCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGcc                                                                                                                                    >  4:1369107/1‑149 (MQ=255)

               ggTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGt                                                                                                                               >  2:1840408/1‑149 (MQ=255)

               gcgacatcgtggataaacttgtcgctgaactgtaaggagggaggggctgatgtctgaatttattacggtagctcgcccctacgccaaagcagcttttgactttgccgtcgaacaccaaagtgtagAACGCCAGCATGTCCTGCCAGCGt                                                                                                                               <  1:1540637‑M1/24‑1 (MQ=255)

                 ttCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGc                                                                                                                                              >  4:646182/1‑132 (MQ=255)

                 ttCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGc                                                                                                                                              <  3:646182/132‑1 (MQ=255)

                 gacatcgtggataaacttgtcgctgaactgtaaggagggaggggctgatgtctgaatttattacggtagctcgcccctacgccaaagcagcttttgactttgccgtcgaacaccaaagtgtagAACGCCAGCATGTCCTGCCAGCGTTc                                                                                                                             >  2:1448086‑M1/124‑149 (MQ=255)

                       ccGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTCCACt                                                                                                                       >  2:1186646/1‑149 (MQ=255)

                        cGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACtt                                                                                                                      <  1:1186646/149‑1 (MQ=255)

                            ttCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGgt                                                                                                                  <  1:1840408/149‑1 (MQ=255)

                               gTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGgt                                                                                                                  >  3:1602915/1‑146 (MQ=255)

                               gTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGgt                                                                                                                  >  3:5762/1‑146 (MQ=255)

                               gTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGgt                                                                                                                  <  4:5762/146‑1 (MQ=255)

                               gTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGgt                                                                                                                  <  4:1602915/146‑1 (MQ=255)

                                         tCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTa                                                                                                                           <  2:834911/127‑1 (MQ=255)

                                         tCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCaaa                                                                                                     <  1:317803/149‑1 (MQ=255)

                                           accacAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGt                                                                                                                               <  4:1512223/121‑1 (MQ=255)

                                           accacAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGt                                                                                                                               >  3:1512223/1‑121 (MQ=255)

                                             cacaAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCGCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCa                                                                                                                                                <  1:1286063/102‑1 (MQ=255)

                                              acaAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTacac                                                                                                                        >  4:604230/1‑125 (MQ=255)

                                              acaAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACtt                                                                                                                      <  4:438143/127‑1 (MQ=255)

                                              acaAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACtt                                                                                                                      >  3:438143/1‑127 (MQ=255)

                                              acaAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTgg                                                                                                                   <  1:1768550/130‑1 (MQ=255)

                                              acaAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTgg                                                                                                                   >  2:1768550/1‑130 (MQ=255)

                                                       gATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAgctgc                                                                                         >  4:674825/1‑147 (MQ=255)

                                                           ggctgatgtctgaatttattacggtagctcgcccctacgccaaagcagcttttgactttgccgtcgaacaccaaagtgtagAACGCCAGCATGTCCTGCCAGCGTTCTac                                                                                                                          <  2:403296‑M1/29‑1 (MQ=255)

                                                           ggctgatgtctgaatttattacggtagctcgcccctacgccaaagcagcttttgactttgccgtcgaacaccaaagtgtagAACGCCAGCATGTCCTGCCAGCGTTCTac                                                                                                                          >  1:403296‑M1/82‑110 (MQ=255)

                                                           aaCGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCt                                                                                                                            >  3:1419153/1‑108 (MQ=255)

                                                           aaCGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCt                                                                                                                            <  4:1419153/108‑1 (MQ=255)

                                                           aaCGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTc                                                                                                              >  2:1236859/1‑122 (MQ=255)

                                                            aCGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTg                                                                                                                    <  4:1279581/115‑1 (MQ=255)

                                                                cTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCaaaa                                                                                              <  3:910802/133‑1 (MQ=255)

                                                                cTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCaaaa                                                                                              >  4:910802/1‑133 (MQ=255)

                                                                cTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAgg                                                                              <  3:1369107/149‑1 (MQ=255)

                                                                 tCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACtt                                                                                                                      >  1:57649/1‑108 (MQ=255)

                                                                 tCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACtt                                                                                                                      <  2:57649/108‑1 (MQ=255)

                                                                      gAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTc                                                                                                                                         >  1:1779904/1‑84 (MQ=255)

                                                                      gAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTc                                                                                                                                         <  2:1779904/84‑1 (MQ=255)

                                                                           tttCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTAcc                                                                   >  3:264982/1‑149 (MQ=255)

                                                                                ggCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGtaat                                                              >  4:409329/1‑149 (MQ=255)

                                                                                   gcAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATaaa                                                           >  4:1144009/1‑149 (MQ=255)

                                                                                   gcAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATaaa                                                           >  1:1304210/1‑149 (MQ=255)

                                                                                   gcAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATaaa                                                           <  4:264982/149‑1 (MQ=255)

                                                                                   gcAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATaaa                                                           >  2:764488/1‑149 (MQ=255)

                                                                                     aaGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAAtt                                                         >  2:727357/1‑149 (MQ=255)

                                                                                       gcgcgcCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCa                                                       >  1:1506900/1‑149 (MQ=255)

                                                                                       gcgcgcCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCa                                                       <  2:1506900/149‑1 (MQ=255)

                                                                                         gcgcCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTa                                                                     >  3:178850/1‑133 (MQ=255)

                                                                                         gcgcCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTa                                                                     <  4:178850/133‑1 (MQ=255)

                                                                                           gcCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACa                                                   >  1:1192488/1‑149 (MQ=255)

                                                                                            ccAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACAt                                                  >  1:94045/1‑149 (MQ=255)

                                                                                             cAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACtt                                                                                                                      >  1:959640/1‑80 (MQ=255)

                                                                                             cAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACtt                                                                                                                      <  2:959640/80‑1 (MQ=255)

                                                                                               gagagaAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAg                                               >  3:23104/1‑149 (MQ=255)

                                                                                               gagagaAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAg                                               >  1:658158/1‑149 (MQ=255)

                                                                                                  agaAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGa                                                                                                            >  2:192501/1‑85 (MQ=255)

                                                                                                  agaAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAg                                                                               >  2:1077143/1‑114 (MQ=255)

                                                                                                  agaAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAg                                                                               <  1:1077143/114‑1 (MQ=255)

                                                                                                   gaAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGcccc                                           >  2:1677482/1‑149 (MQ=255)

                                                                                                   caaagcagcttttgactttgccgtcgaacaccaaagtgtagAACGCCAGCATGTCCTGCCAGCg                                                                                                                                >  4:1725520‑M1/42‑64 (MQ=255)

                                                                                                   caaagcagcttttgactttgccgtcgaacaccaaagtgtagAACGCCAGCATGTCCTGCCAGCg                                                                                                                                <  3:1725520‑M1/23‑1 (MQ=255)

                                                                                                          tGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTg                                                                                                                                      <  3:247234/51‑1 (MQ=255)

                                                                                                          tGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATc                                                 >  2:960088/1‑136 (MQ=255)

                                                                                                          tGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCctccctcc                                    >  3:810023/1‑149 (MQ=255)

                                                                                                          tGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCctccctcc                                    <  2:700684/149‑1 (MQ=255)

                                                                                                           gCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCcctcct                                   <  1:891548/149‑1 (MQ=255)

                                                                                                            ccATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAgg                                                                              >  1:1004585/1‑105 (MQ=255)

                                                                                                            ccATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAgg                                                                              <  2:1004585/105‑1 (MQ=255)

                                                                                                              aTTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCcctccctc                                     >  3:1310256/1‑144 (MQ=255)

                                                                                                               tttGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGc                                                                           >  1:720826/1‑105 (MQ=255)

                                                                                                                  gTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGtt                            >  4:1506056/1‑149 (MQ=255)

                                                                                                                   ttCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTc                           >  3:1229267/1‑149 (MQ=255)

                                                                                                                    tCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCa                          >  1:1884782/1‑149 (MQ=255)

                                                                                                                    tCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCa                          <  1:555939/149‑1 (MQ=255)

                                                                                                                    tCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCa                          <  3:1144009/149‑1 (MQ=255)

                                                                                                                     cGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTa                                 <  4:1306224/141‑1 (MQ=255)

                                                                                                                     cGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTa                                 >  3:1306224/1‑141 (MQ=255)

                                                                                                                     cGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAg                         <  1:764488/149‑1 (MQ=255)

                                                                                                                       tttttGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACGCTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTc                                                        <  4:1099808/116‑1 (MQ=255)

                                                                                                                       tttttGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAgg                                                                              >  1:920591/1‑94 (MQ=255)

                                                                                                                       tttttGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAgg                                                                              <  2:920591/94‑1 (MQ=255)

                                                                                                                           tGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACaa                   <  3:1506056/149‑1 (MQ=255)

                                                                                                                           tGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACaa                   <  4:23104/149‑1 (MQ=255)

                                                                                                                              ttACCTCGTCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGtt                >  1:370467/1‑149 (MQ=255)

                                                                                                                              ttACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGtt                >  4:266017/1‑149 (MQ=255)

                                                                                                                              ttACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGtt                <  4:243717/149‑1 (MQ=255)

                                                                                                                                  cTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACaa                   <  4:1887020/142‑1 (MQ=255)

                                                                                                                                  cTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACaa                   >  3:1887020/1‑142 (MQ=255)

                                                                                                                                  cTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATc            <  2:1304210/149‑1 (MQ=255)

                                                                                                                                   tCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATcc           >  2:1483253/1‑149 (MQ=255)

                                                                                                                                   tCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATcc           >  2:1637324/1‑149 (MQ=255)

                                                                                                                                    cggcggCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTAcc                                                                   >  2:687719/1‑92 (MQ=255)

                                                                                                                                    cggcggCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTAcc                                                                   <  1:687719/92‑1 (MQ=255)

                                                                                                                                         gcAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATg     >  2:647664/1‑149 (MQ=255)

                                                                                                                                          cAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGt    <  2:527824/149‑1 (MQ=255)

                                                                                                                                           aaaCGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATc            <  2:925327/140‑1 (MQ=255)

                                                                                                                                           aaaCGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTc   >  1:239484/1‑149 (MQ=255)

                                                                                                                                           aaaCGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTc   >  2:1873702/1‑149 (MQ=255)

                                                                                                                                           aaaCGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTc   >  3:212940/1‑149 (MQ=255)

CCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCG  >  NC_000913/3920163‑3920451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.