New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2330956 =	52 (1.020)	4 (0.080)	4/238	NT	7.5%	pseudogene (3447/4605 nt)	yfaS	pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein
	?	NC_000913	2330992 =	50 (1.040)					pseudogene (3411/4605 nt)	yfaS	pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein

TTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGAATGTCGTTAGCGGCGGCACTTTGATGATC  >  NC_000913/2330846‑2331138                                                                                                                                                   |                                                                                                                                                   ttCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTAcca                                                                                                                                                  >  2:442589/1‑149 (MQ=255)      ctcCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTAccatgccc                                                                                                                                             <  4:157774/149‑1 (MQ=255)             gcCCATGCCAGCACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGt                                                                                                                                      >  4:399899/1‑149 (MQ=255)              cccATGCCAGCACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTa                                                                                                                                     >  2:469662/1‑149 (MQ=255)                      aGCACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGc                                                                                                                             >  3:320827/1‑149 (MQ=255)                        cACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGt                                                                                                                           >  1:83422/1‑149 (MQ=255)                               gcCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCAtt                                                                                                                    <  4:282101/149‑1 (MQ=255)                                        aaTAACGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTc                                                                                                           >  2:106414/1‑149 (MQ=255)                                         aTAACGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCa                                                                                                          <  2:48448/149‑1 (MQ=255)                                           aaCGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCAcc                                                                                                        >  4:272703/1‑149 (MQ=255)                                                         tgcctgcTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAgc                                                                                          <  1:442589/149‑1 (MQ=255)                                                          gcctgcTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAgcg                                                                                         >  3:326792/1‑149 (MQ=255)                                                           cctgcTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTaaa                                                                                            >  4:6440/1‑145 (MQ=255)                                                           cctgcTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTaaa                                                                                            <  3:6440/145‑1 (MQ=255)                                                                tCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGcc                                                                                                                 <  4:224080/119‑1 (MQ=255)                                                                tCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGcc                                                                                                                 >  3:224080/1‑119 (MQ=255)                                                                          tGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGcc                                                                         >  4:413564/1‑149 (MQ=255)                                                                           gTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCATCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCa                                                                        >  4:286145/1‑149 (MQ=255)                                                                              gAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGtt                                                                     <  3:272703/149‑1 (MQ=255)                                                                              gAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGtt                                                                     <  4:158290/149‑1 (MQ=255)                                                                              gAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGtt                                                                     >  1:398101/1‑149 (MQ=255)                                                                              gAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGtt                                                                     >  3:163970/1‑149 (MQ=255)                                                                                 cATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCa                                                                  >  2:405018/1‑149 (MQ=255)                                                                                    atGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGccc                                                                             <  4:223386/135‑1 (MQ=255)                                                                                    atGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGccc                                                                             >  3:223386/1‑135 (MQ=255)                                                                                         gcCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGc                                                          >  2:98135/1‑149 (MQ=255)                                                                                         gcCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGc                                                          >  2:120850/1‑149 (MQ=255)                                                                                         gcCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGc                                                          >  4:429679/1‑149 (MQ=255)                                                                                          ccAGTTTTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAGGCGCGCTCCGGGCCCCGCCCGTTGCATCAGCCGCa                                                         >  1:422265/1‑149 (MQ=255)                                                                                          ccAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCa                                                         >  4:165002/1‑149 (MQ=255)                                                                                           cAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTaa                                                                                                                                    <  3:90803/73‑1 (MQ=255)                                                                                           cAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTaa                                                                                                                                    >  4:90803/1‑73 (MQ=255)                                                                                           cAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAgcgcg                                                                                       <  3:260267/118‑1 (MQ=255)                                                                                           cAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAgcgcg                                                                                       >  4:260267/1‑118 (MQ=255)                                                                                              tATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACg                                                     <  2:83422/149‑1 (MQ=255)                                                                                                     gttgttGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTcc                                                                                   >  4:353390/1‑112 (MQ=255)                                                                                                     gttgttGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTcc                                                                                   <  3:353390/112‑1 (MQ=255)                                                                                                     gttgttGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATcc                                              >  2:160941/1‑149 (MQ=255)                                                                                                      ttgttgCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCt                                             <  1:98135/149‑1 (MQ=255)                                                                                                      ttgttgCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCt                                             <  4:190996/149‑1 (MQ=255)                                                                                                      ttgttgCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCt                                             <  1:120850/149‑1 (MQ=255)                                                                                                         ttgCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGaa                                          <  3:399899/149‑1 (MQ=255)                                                                                                           gCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAatc                                        >  2:92604/1‑149 (MQ=255)                                                                                                              ttACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAatcatc                                     >  4:209323/1‑149 (MQ=255)                                                                                                                acgccgactggcaggccagccaggcgatcggcgtaCCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCGACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGtt                                                                     >  3:60108‑M2/36‑115 (MQ=255)                                                                                                                acgccgactggcaggccagccaggcgatcggcgtaCCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCGACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGtt                                                                     <  4:60108‑M2/80‑1 (MQ=255)                                                                                                                  gccgactggcaggccagccaggcgatcggcgtaCCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGcccc                                                                            >  2:169208‑M2/34‑106 (MQ=255)                                                                                                                  gccgactggcaggccagccaggcgatcggcgtaCCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGcccc                                                                            <  1:169208‑M2/73‑1 (MQ=255)                                                                                                                     GATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGaa                              <  3:224039‑M1/149‑1 (MQ=255)                                                                                                                         gCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGAATGTc                          >  4:338779/1‑149 (MQ=255)                                                                                                                           ctggctggCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGAATGTCGt                        <  1:469662/149‑1 (MQ=255)                                                                                                                             ggctggcCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGAATGTCGTTa                      <  1:106414/149‑1 (MQ=255)                                                                                                                             ggctggcCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGAATGTCGTTa                      <  1:193179/149‑1 (MQ=255)                                                                                                                              gctggcCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGAATGTCGTTAg                     <  4:320827/149‑1 (MQ=255)                                                                                                                                    cTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGAATGTCGTTAGcggcgg               >  4:58786/1‑149 (MQ=255)                                                                                                                                    cTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGAATGTCGTTAGcggcgg               >  2:305002/1‑149 (MQ=255)                                                                                                                                          gTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGAATGTCGTTAGCGGCGGCACttt         >  1:280608/1‑149 (MQ=255)                                                                                                                                                 taCCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGAATGTCGTTAGCGGCGGCACTTTGATGATc  <  3:429679‑M2/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAGCTGTCGAGCATATGCTGCCAGTATTCCGGTTGTTGCGTTACGCCGATCGCCTGGCTGGCCTGCCAGTCGGCGTACCATGCCCATGCCGTAAGGAAGGCGTCACCATTGCCATCTTCACCCCACCAGGTAAAGCGCGCTCCGGGCCCCGCCAGTTGCATCAGCCGCAGACGGTTATCCTGAATCATCTGACGAATGTCGTTAGCGGCGGCACTTTGATGATC  >  NC_000913/2330846‑2331138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.