New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	412077 =	38 (0.870)	5 (0.120)	4/240	NT	12.7%	coding (405/1185 nt)	araJ	L‑arabinose‑inducible putative transporter, MFS family
	?	NC_000913	412119 =	33 (0.800)					coding (363/1185 nt)	araJ	L‑arabinose‑inducible putative transporter, MFS family

CGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGC  >  NC_000913/411935‑412224                                                                                                                                               |                                                                                                                                                    cgcgAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGa                                                                                                                                                >  4:141269/1‑148 (MQ=255)   tggcgttgtgcgtcattggcaacgccatgttcacgctctcttcgtcttccctgatgctcgccattggtcggctggtatccggctttccgcatggcgcattttttggcgtcggagcgatcgtgttatcaaaaattatcaaaCCCGGaaa                                                                                                                                              >  3:333293‑M1/141‑148 (MQ=255)     aaTATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAAcc                                                                                                                                            >  4:62359/1‑148 (MQ=255)     aaTATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCa                                                                                                                                           >  1:153838/1‑149 (MQ=255)      atatCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCa                                                                                                                                           >  4:298083/1‑148 (MQ=255)                  cAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCAcggc                                                                                                                              >  2:165739/1‑149 (MQ=255)                   aaaaaTAGACCGATGCCATCACCTCAATATTAAAAACAGCGATCAATAAAAAGGTGTACCGCCAGCTATATTCCTTACTTAAACACGTTCCCCTCGGAATCCCCCGCAATTTGGCGACTGTCATCTCGTAAACCATCCCCGCCTcgtc                                                                                                                              <  4:9163/148‑3 (MQ=255)                   aaaaaTAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCAcggc                                                                                                                              >  4:101363/1‑148 (MQ=255)                    aaaaTAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATCAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCAt                                                                                                                                          <  4:148552/135‑1 (MQ=255)                    aaaaTAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCAt                                                                                                                                          >  3:148552/1‑135 (MQ=255)                                     gctctcttcgtcttacctgatgctcgccattggtcggctggtatccggctttccgcatggcgcattttttggcgtcggagcgatcgtgttatcaaaaattatcaaaCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGt                                                                                                           >  2:213026‑M1/107‑149 (MQ=255)                                      cACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGtt                                                                                                          <  1:131151/149‑1 (MQ=255)                                      cACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGtt                                                                                                          <  1:50408/149‑1 (MQ=255)                                      cACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGt                                                                                                           <  3:166531/148‑1 (MQ=255)                                       aCCGCAATGTTAAAAACAGCGATCAATAAAAAGGTGTAACACCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCTCAGCAAATTGGCGACTGTCATCCCGGACACCATCCCCGCGACGGCGGCGATGACTTTTCCGGGtt                                                                                                          <  3:251722/148‑1 (MQ=255)                                                cttacctgatgctcgccattggtcggctggtatccggctttccgcatggcgcattttttggcgtcggagcgatcgtgttatcaaaaattatcaaaCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGt                                                                                                           >  4:86199‑M1/96‑138 (MQ=255)                                                cttacctgatgctcgccattggtcggctggtatccggctttccgcatggcgcattttttggcgtcggagcgatcgtgttatcaaaaattatcaaaCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGt                                                                                                           <  3:86199‑M1/43‑1 (MQ=255)                                                     aaCAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGGTa                                                                                           >  2:190551/1‑149 (MQ=255)                                                        aGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGGTAaca                                                                                        <  1:190551/149‑1 (MQ=255)                                                          cGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACg                                                                                      >  2:299095/1‑149 (MQ=255)                                                            aTCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGa                                                                                     <  3:141269/148‑1 (MQ=255)                                                                          gtAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCa                                                                       >  3:227251/1‑148 (MQ=255)                                                                             aCGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCaaaaa                                                                   >  2:3530/1‑149 (MQ=255)                                                                                 ccggctttccgcatggcgcattttttggcgtcggagcgatcgtgttatcaaaaattatcaaaCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCggg                                                                                                            <  3:189347‑M1/42‑1 (MQ=255)                                                                                 ccggctttccgcatggcgcattttttggcgtcggagcgatcgtgttatcaaaaattatcaaaCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCggg                                                                                                            >  4:189347‑M1/63‑104 (MQ=255)                                                                                  aGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTCGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGGCAAAAAATgc                                                               <  4:9993/148‑1 (MQ=255)                                                                                            cTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGaa                                                    >  1:201256/1‑149 (MQ=255)                                                                                            cTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGa                                                     >  3:297383/1‑148 (MQ=255)                                                                                             tGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGaa                                                    <  4:403438/148‑1 (MQ=255)                                                                                              gACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGaaa                                                   >  4:21709/1‑148 (MQ=255)                                                                                                cTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAAt                                                                 <  4:283168/132‑1 (MQ=255)                                                                                                cTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAAt                                                                 >  3:283168/1‑132 (MQ=255)                                                                                                 ttAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGcc                                                <  4:182917/148‑1 (MQ=255)                                                                                                  tAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCg                                               >  3:398135/1‑148 (MQ=255)                                                                                                   aaaTACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGa                                             <  1:125479/149‑1 (MQ=255)                                                                                                              cAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCgg                                              <  1:58972/137‑1 (MQ=255)                                                                                                              cAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCgg                                              >  2:58972/1‑137 (MQ=255)                                                                                                              cAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCAGa                                   >  4:386421/1‑148 (MQ=255)                                                                                                                 cGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCaa                               <  2:153838/149‑1 (MQ=255)                                                                                                                     aTGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGc                           <  1:165739/149‑1 (MQ=255)                                                                                                                       gCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCg                          <  3:271902/148‑1 (MQ=255)                                                                                                                       gCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTCACTTTTCCGGGTTTGATAATTTTTGATAACACTATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCg                          <  4:297383/148‑1 (MQ=255)                                                                                                                                    gCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAg             <  3:298083/148‑1 (MQ=255)                                                                                                                                     cGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGa            <  3:101363/148‑1 (MQ=255)                                                                                                                                            cATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGc                           >  4:210304/1‑126 (MQ=255)                                                                                                                                            cATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGc                           <  3:210304/126‑1 (MQ=255)                                                                                                                                            cATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAagag     <  3:21709/148‑1 (MQ=255)                                                                                                                                              tCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGc  >  2:81585/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                    CGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGC  >  NC_000913/411935‑412224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.