New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	412077 =	38 (0.870)	5 (0.120)	4/240	NT	12.7%	coding (405/1185 nt)	araJ	L‑arabinose‑inducible putative transporter, MFS family
	?	NC_000913	412119 =	33 (0.800)					coding (363/1185 nt)	araJ	L‑arabinose‑inducible putative transporter, MFS family

TCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACAACGCCA  >  NC_000913/411971‑412258                                                                                                                                                     |                                                                                                                                            gctctcttcgtcttacctgatgctcgccattggtcggctggtatccggctttccgcatggcgcattttttggcgtcggagcgatcgtgttatcaaaaattatcaaaCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGt                                                                                                                                             >  2:213026‑M1/107‑149 (MQ=255)  cACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGtt                                                                                                                                            <  1:131151/149‑1 (MQ=255)  cACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGtt                                                                                                                                            <  1:50408/149‑1 (MQ=255)  cACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGt                                                                                                                                             <  3:166531/148‑1 (MQ=255)   aCCGCAATGTTAAAAACAGCGATCAATAAAAAGGTGTAACACCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCTCAGCAAATTGGCGACTGTCATCCCGGACACCATCCCCGCGACGGCGGCGATGACTTTTCCGGGtt                                                                                                                                            <  3:251722/148‑1 (MQ=255)            cttacctgatgctcgccattggtcggctggtatccggctttccgcatggcgcattttttggcgtcggagcgatcgtgttatcaaaaattatcaaaCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGt                                                                                                                                             <  3:86199‑M1/43‑1 (MQ=255)            cttacctgatgctcgccattggtcggctggtatccggctttccgcatggcgcattttttggcgtcggagcgatcgtgttatcaaaaattatcaaaCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGt                                                                                                                                             >  4:86199‑M1/96‑138 (MQ=255)                 aaCAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGGTa                                                                                                                             >  2:190551/1‑149 (MQ=255)                    aGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGGTAaca                                                                                                                          <  1:190551/149‑1 (MQ=255)                      cGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACg                                                                                                                        >  2:299095/1‑149 (MQ=255)                        aTCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGa                                                                                                                       <  3:141269/148‑1 (MQ=255)                                      gtAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCa                                                                                                         >  3:227251/1‑148 (MQ=255)                                         aCGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCaaaaa                                                                                                     >  2:3530/1‑149 (MQ=255)                                              aGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTCGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGGCAAAAAATgc                                                                                                 <  4:9993/148‑1 (MQ=255)                                                        cTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGaa                                                                                      >  1:201256/1‑149 (MQ=255)                                                        cTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGa                                                                                       >  3:297383/1‑148 (MQ=255)                                                         tGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGaa                                                                                      <  4:403438/148‑1 (MQ=255)                                                          gACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGaaa                                                                                     >  4:21709/1‑148 (MQ=255)                                                            cTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAAt                                                                                                   >  3:283168/1‑132 (MQ=255)                                                            cTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAAt                                                                                                   <  4:283168/132‑1 (MQ=255)                                                             ttAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGcc                                                                                  <  4:182917/148‑1 (MQ=255)                                                              tAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCg                                                                                 >  3:398135/1‑148 (MQ=255)                                                               aaaTACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGa                                                                               <  1:125479/149‑1 (MQ=255)                                                                          cAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCgg                                                                                >  2:58972/1‑137 (MQ=255)                                                                          cAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCgg                                                                                <  1:58972/137‑1 (MQ=255)                                                                          cAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCAGa                                                                     >  4:386421/1‑148 (MQ=255)                                                                             cGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCaa                                                                 <  2:153838/149‑1 (MQ=255)                                                                                 aTGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGc                                                             <  1:165739/149‑1 (MQ=255)                                                                                   gCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCg                                                            <  3:271902/148‑1 (MQ=255)                                                                                   gCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTCACTTTTCCGGGTTTGATAATTTTTGATAACACTATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCg                                                            <  4:297383/148‑1 (MQ=255)                                                                                                gCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAg                                               <  3:298083/148‑1 (MQ=255)                                                                                                 cGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGa                                              <  3:101363/148‑1 (MQ=255)                                                                                                        cATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGc                                                             <  3:210304/126‑1 (MQ=255)                                                                                                        cATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGc                                                             >  4:210304/1‑126 (MQ=255)                                                                                                        cATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAagag                                       <  3:21709/148‑1 (MQ=255)                                                                                                          tCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGc                                    >  2:81585/1‑149 (MQ=255)                                                                                                          acccggaaaagtcaccgccgccgtggcggggatggtttccgggTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAg                                               >  4:86199‑M2/44‑138 (MQ=255)                                                                                                          acccggaaaagtcaccgccgccgtggcggggatggtttccgggTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAg                                               <  3:86199‑M2/95‑1 (MQ=255)                                                                                                          acccggaaaagtcaccgccgccgtggcggggatggtttccgggTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGc                                    >  2:213026‑M2/44‑149 (MQ=255)                                                                                                           cccggaaaagtcaccgccgccgtggcggggatggtttccgggTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCgg                                                                                >  4:189347‑M2/43‑104 (MQ=255)                                                                                                           cccggaaaagtcaccgccgccgtggcggggatggtttccgggTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCgg                                                                                <  3:189347‑M2/62‑1 (MQ=255)                                                                                                            CCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGt                                  >  1:341140‑M1/1‑149 (MQ=255)                                                                                                             CGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGt                                  >  3:386421‑M1/1‑148 (MQ=255)                                                                                                              GGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGa                                <  2:227738‑M1/149‑1 (MQ=255)                                                                                                                 AACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACa                             >  1:100013‑M1/1‑149 (MQ=255)                                                                                                                  ACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTa                                                 <  3:238755‑M1/128‑1 (MQ=255)                                                                                                                  ACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTa                                                 >  4:238755‑M1/1‑128 (MQ=255)                                                                                                                         ccGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGtt                      >  3:178840/1‑148 (MQ=255)                                                                                                                              aCGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCaa                 <  4:178840/148‑1 (MQ=255)                                                                                                                              aCGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAAt                <  1:3530/149‑1 (MQ=255)                                                                                                                                      ggTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGcaca        >  1:352083/1‑149 (MQ=255)                                                                                                                                        tGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGc                    >  1:253160/1‑135 (MQ=255)                                                                                                                                        tGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGc                    <  2:253160/135‑1 (MQ=255)                                                                                                                                        tGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACAAc      >  2:50451/1‑149 (MQ=255)                                                                                                                                          aCTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGaa                                          >  1:112349/1‑111 (MQ=255)                                                                                                                                          aCTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGaa                                          <  2:112349/111‑1 (MQ=255)                                                                                                                                            ttttCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACAACGcc   <  3:62359/148‑1 (MQ=255)                                                                                                                                             tttccgggTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGGAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACAACGcca  >  3:333293‑M2/9‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                            TCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACAACGCCA  >  NC_000913/411971‑412258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.