| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3588334 = | 27 (0.620) | 3 (0.070) | 3/242 | NT | 10.3% | coding (847/1071 nt) | ugpC | sn‑glycerol‑3‑phosphate ABC transporter ATPase |
| ? | NC_000913 | 3588367 = | 27 (0.650) | coding (814/1071 nt) | ugpC | sn‑glycerol‑3‑phosphate ABC transporter ATPase | |||||
CCGTCGGGCGCTCCTGATGCGCCAGTCGCACCACCAGCTTCTGCTCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCC > NC_000913/3588187‑3588475 | ccGTCGGGCGCTCCTGATGCGCCAGTCGCACCACCAGCTTCTGCTCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTc < 4:196173/148‑1 (MQ=255) cgaaaagcccgccagcctgtttgtagcgagttttatcggcagtccggcgatgaacctgctgacaggccgcgtgaataacgaaggcacgcatttcgaactggacggcggtattgagctgccgctaaacggtggctaccgtcagtatgc > 1:219384‑M1/147‑147 (MQ=255) cgaaaagcccgccagcctgtttgtagcgagttttatcggcagtccggcgatgaacctgctgacaggccgcgtgaataacgaaggcacgcatttcgaactggacggcggtattgagctgccgctaaacggtggctaccgtcagtatgc < 2:219384‑M1/1‑1 (MQ=255) ttgggCGCTCCTGTTGCGTCAGTCGCACCACCAGTTTGCGCGTGCTGCCGCCTCCGTGCGCCAGGTTATCTGCGCCCAGAGTCTCCCGCGTGCCCATCCCTTTCGTTTCGCCGGCTGCTCCGTGCCAGCTTAGAGCAATATGTccccg < 4:167183/146‑3 (MQ=255) aaagcccgccagcctgtttgtagcgagttttatcggcagtccggcgatgaacctgctgacaggccgcgtgaataacgaaggcacgcatttcgaactggacggcggtattgagctgccgctaaacggtggctaccgtcagtatgCCggg > 3:237511‑M1/144‑148 (MQ=255) tCCTGATGCGCCAGTCGCACCACCAGCTTCTGCTCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGc > 3:381702/1‑148 (MQ=255) aTGCGCCAGTCGCACCACCAGCTTCTGCTCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCgaga > 4:27168/1‑148 (MQ=255) cgcCAGTCGCACCACCAGCTTCTGCTCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTc > 4:214730/1‑148 (MQ=255) tcggcagtccggcgatgaacctgctgacaggccgcgtgaataacgaaggcacgcatttcgaactggacggcggtattgagctgccgctaaacggtggctaccgtcagtatgCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATa > 4:131189‑M1/112‑148 (MQ=255) tCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGAc < 1:215953/145‑1 (MQ=255) tCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGAc > 2:215953/1‑145 (MQ=255) ccccAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCg < 4:153439/114‑1 (MQ=255) ccccAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCg > 3:153439/1‑114 (MQ=255) cGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAg < 4:154452/148‑1 (MQ=255) gcCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCTACCGTTTAGCGGCa < 4:388069/148‑1 (MQ=255) ccAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGc > 1:99945/1‑149 (MQ=255) aGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTc > 2:379620/1‑149 (MQ=255) gTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCa > 3:15150/1‑148 (MQ=255) ttATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAAt < 2:110710/149‑1 (MQ=255) ttATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAAt < 1:379620/149‑1 (MQ=255) cTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGc < 4:375916/137‑1 (MQ=255) cTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGc > 3:375916/1‑137 (MQ=255) acgaaggcacgcatttcgaactggacggcggtattgagctgccgctaaacggtggctaccgtcagtatgCCGGGCGAATGCCGAGAGTCATTTTACGCCCgg > 1:173221‑M1/70‑102 (MQ=255) acgaaggcacgcatttcgaactggacggcggtattgagctgccgctaaacggtggctaccgtcagtatgCCGGGCGAATGCCGAGAGTCATTTTACGCCCgg < 2:173221‑M1/33‑1 (MQ=255) ctcCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCg > 3:208304/1‑148 (MQ=255) gCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCACCTCAATACCGCCGTCCAGTTCGAAATg < 3:27168/148‑1 (MQ=255) gtgtCCATCACCATCGGTACGCCGCCGTCTGCCTGCGAGCTTAGCTCAATATGTCCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGGCCAGTTCGAAATGCg < 3:260819/148‑1 (MQ=255) gtgtCCATCACCATCGGTACGACGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCg < 4:381702/148‑1 (MQ=255) cATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCtt > 1:124223/1‑149 (MQ=255) aCCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGt > 3:202322/1‑148 (MQ=255) ccATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTa < 2:124223/149‑1 (MQ=255) cATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTa < 3:214730/148‑1 (MQ=255) tCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTAtt < 4:202322/148‑1 (MQ=255) aaTATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGc < 2:162729/149‑1 (MQ=255) tatGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGcc > 3:259721/1‑148 (MQ=255) | CCGTCGGGCGCTCCTGATGCGCCAGTCGCACCACCAGCTTCTGCTCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCC > NC_000913/3588187‑3588475 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |