New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3588334 =	27 (0.620)	3 (0.070)	3/242	NT	10.3%	coding (847/1071 nt)	ugpC	sn‑glycerol‑3‑phosphate ABC transporter ATPase
	?	NC_000913	3588367 =	27 (0.650)					coding (814/1071 nt)	ugpC	sn‑glycerol‑3‑phosphate ABC transporter ATPase

GCTTCTGCTCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCG  >  NC_000913/3588223‑3588512                                                                                                                                                 |                                                                                                                                                  tcggcagtccggcgatgaacctgctgacaggccgcgtgaataacgaaggcacgcatttcgaactggacggcggtattgagctgccgctaaacggtggctaccgtcagtatgCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATa                                                                                                                                                >  4:131189‑M1/112‑148 (MQ=255)         tCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGAc                                                                                                                                           <  1:215953/145‑1 (MQ=255)         tCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGAc                                                                                                                                           >  2:215953/1‑145 (MQ=255)                      cGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAg                                                                                                                           <  4:154452/148‑1 (MQ=255)                           gcCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCTACCGTTTAGCGGCa                                                                                                                      <  4:388069/148‑1 (MQ=255)                            ccAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGc                                                                                                                    >  1:99945/1‑149 (MQ=255)                              aGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTc                                                                                                                  >  2:379620/1‑149 (MQ=255)                                gTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCa                                                                                                                 >  3:15150/1‑148 (MQ=255)                                 ttATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAAt                                                                                                               <  1:379620/149‑1 (MQ=255)                                 ttATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAAt                                                                                                               <  2:110710/149‑1 (MQ=255)                                     cTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGc                                                                                                                       >  3:375916/1‑137 (MQ=255)                                     cTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGc                                                                                                                       <  4:375916/137‑1 (MQ=255)                                                  ctcCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCg                                                                                               >  3:208304/1‑148 (MQ=255)                                                       gCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCACCTCAATACCGCCGTCCAGTTCGAAATg                                                                                          <  3:27168/148‑1 (MQ=255)                                                         gtgtCCATCACCATCGGTACGCCGCCGTCTGCCTGCGAGCTTAGCTCAATATGTCCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGGCCAGTTCGAAATGCg                                                                                        <  3:260819/148‑1 (MQ=255)                                                         gtgtCCATCACCATCGGTACGACGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCg                                                                                        <  4:381702/148‑1 (MQ=255)                                                              cATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCtt                                                                                  >  1:124223/1‑149 (MQ=255)                                                                  aCCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGt                                                                               >  3:202322/1‑148 (MQ=255)                                                                   ccATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTa                                                                             <  2:124223/149‑1 (MQ=255)                                                                    cATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTa                                                                             <  3:214730/148‑1 (MQ=255)                                                                      tCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTAtt                                                                           <  4:202322/148‑1 (MQ=255)                                                                                                        aaTATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGc                                        <  2:162729/149‑1 (MQ=255)                                                                                                          tatGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGcc                                       >  3:259721/1‑148 (MQ=255)                                                                                                            tatgccgggcgtaaaatgactctcggcattcgcccggCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGa                                     >  4:131189‑M2/38‑148 (MQ=255)                                                                                                                ccgggcgtaaaatgactctcggcattcgcccggCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGt                                                                               >  1:173221‑M2/34‑102 (MQ=255)                                                                                                                ccgggcgtaaaatgactctcggcattcgcccggCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGt                                                                               <  2:173221‑M2/69‑1 (MQ=255)                                                                                                                   GGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACt                              >  3:169072‑M1/1‑148 (MQ=255)                                                                                                                     CGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAaaacgcg                            >  4:253932‑M1/1‑145 (MQ=255)                                                                                                                       aaTGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGcc                                               >  3:194528/1‑127 (MQ=255)                                                                                                                       aaTGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGcc                                               <  4:194528/127‑1 (MQ=255)                                                                                                                          gCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACa                       <  3:368394/148‑1 (MQ=255)                                                                                                                             gagaGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGATCATCGCCGGACTGCCGATAAAACTCGCTACAAAc                    >  3:277065/1‑148 (MQ=255)                                                                                                                                   cATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTg              <  4:208304/148‑1 (MQ=255)                                                                                                                                     ttttACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGc            >  4:169031/1‑148 (MQ=255)                                                                                                                                            cccggCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCttt     >  3:237511‑M2/6‑148 (MQ=255)                                                                                                                                              cgacATACTGACGGTAGCCACCGTTCAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTc   <  3:265243/145‑1 (MQ=255)                                                                                                                                                gCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCg  <  2:219384‑M2/146‑1 (MQ=255)                                                                                                                                                gCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCg  >  1:219384‑M2/2‑147 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GCTTCTGCTCGCCCCAGCGTCCGTGCGCCAGGTTATCTGCGCCGAGGATCTCCAGCGTGTCCATCACCATCGGTACGCCGCCTTCTGCCTGCGAGCTTAGCGCAATATGTTCCGGGCGAATGCCGAGAGTCATTTTACGCCCGGCATACTGACGGTAGCCACCGTTTAGCGGCAGCTCAATACCGCCGTCCAGTTCGAAATGCGTGCCTTCGTTATTCACGCGGCCTGTCAGCAGGTTCATCGCCGGACTGCCGATAAAACTCGCTACAAACAGGCTGGCGGGCTTTTCG  >  NC_000913/3588223‑3588512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.