New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3083831 =	312 (1.150)	15 (0.060)	11/240	NT	5.1%	intergenic (‑34/+104)	speB/speA	agmatinase/biosynthetic arginine decarboxylase, PLP‑binding
	?	NC_000913	3083868 =	270 (1.070)					intergenic (‑71/+67)	speB/speA	agmatinase/biosynthetic arginine decarboxylase, PLP‑binding

TGAAGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3083986‑3083831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaagggttGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATCAA  >  NC_000913/3083868‑3084014                                                                                                                                                                                                                                                                                                                 TGAAGAGTTCGAGGCAGGTTTGTACGGTGATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGG                                                                                                                                                            >  3:2132958/1‑149  GAAGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGA                                                                                                                                                           >  4:2253009/1‑149   AAGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAA                                                                                                                                                          <  2:593123/149‑1   AAGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAA                                                                                                                                                          >  3:68066/1‑149   AAGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAA                                                                                                                                                          <  3:1921172/149‑1   AAGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATACGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAA                                                                                                                                                          <  4:323857/149‑1    AGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAG                                                                                                                                                         <  1:379689/149‑1    AGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAG                                                                                                                                                         <  1:633592/149‑1     GAGTTCGAGGCAGGTTTGTACGGTTTTACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGG                                                                                                                                                        <  1:2330131/149‑1     GAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGCCGCGGAAGG                                                                                                                                                        <  2:1539194/149‑1     GAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGG                                                                                                                                                        <  2:1145401/149‑1     GAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGG                                                                                                                                                        <  4:810746/149‑1     GAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGG                                                                                                                                                        <  3:90808/149‑1        TTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACTATTTATTGTGACAAATCCAACCCATCCTCGTCGGGCCTAACGACGCGGAAGGGTT                                                                                                                                                     >  1:720808/1‑149        TTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTT                                                                                                                                                     >  4:61375/1‑149                  GTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCA                                                                                                                                           <  1:348943/149‑1                  GTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCA                                                                                                                                           <  3:1746537/149‑1                                           AGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAG                                                                                                                                                         >  3:1826812/1‑110                                           AGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAG                                                                                                                                                         <  4:1826812/110‑1                                                       CCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAG                                                                                                                                                         >  1:659661/1‑98                                                       CCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAG                                                                                                                                                         <  2:659661/98‑1                                                        CTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGA                                                                                                                                                           >  4:960078/1‑95                                                        CTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATACGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGA                                                                                                                                                           <  3:960078/95‑1                                                                                                                       CAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGA                                      >  4:668522/1‑149                                                                                                                        AACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAA                                     >  2:1336611/1‑149                                                                                                                          CCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAA                                                                                                        <  2:2048805/80‑1                                                                                                                          CCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAA                                                                                                        >  1:2048805/1‑80                                                                                                                           CCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTC                                  >  3:1163551/1‑149                                                                                                                           CCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAA                                     <  3:1399518/146‑1                                                                                                                           CCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAA                                     >  4:1399518/1‑146                                                                                                                            CTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCT                                 >  4:89155/1‑149                                                                                                                             TTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTT                                >  1:211532/1‑149                                                                                                                             TTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAA                                     >  3:1211162/1‑144                                                                                                                             TTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAA                                     <  4:1211162/144‑1                                                                                                                                        GCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGC                                                                                                      <  1:1007930/68‑1                                                                                                                                        GCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGC                                                                                                      >  2:1007930/1‑68                                                                                                                                                   CGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTC          <  4:1163551/149‑1                                                                                                                                                    GGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCA         <  3:1528032/149‑1                                                                                                                                                    GGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCA         <  3:2241952/149‑1                                                                                                                                                     GAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAG        >  3:734421/1‑149                                                                                                                                                     GAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAG        >  2:573887/1‑149                                                                                                                                                     GAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAG        <  4:76932/149‑1                                                                                                                                                     GAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGACTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAG        >  3:1315062/1‑149                                                                                                                                                     GAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGC                                                                                                      <  2:2480233/55‑1                                                                                                                                                     GAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGC                                                                                                      >  1:2480233/1‑55                                                                                                                                                       AGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCA      <  4:1669761/149‑1                                                                                                                                                       AGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCA      <  4:847484/149‑1                                                                                                                                                          GTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATCA   >  2:139527/1‑149                                                                                                                                                          GTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATCA   >  4:942173/1‑149                                                                                                                                                           TTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATCAA  >  4:1838937/1‑149                                                                                                                                                           TTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATCAA  <  2:776976/149‑1                                                                                                                                                           TTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATCAA  >  1:1401069/1‑149                                                                                                                                                                                                                                                                                                                 TGAAGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3083986‑3083831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaagggttGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATCAA  >  NC_000913/3083868‑3084014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.