mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 253 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4587668 = | 228 (0.840) | 4 (0.020) | 3/242 | NT | 1.9% | coding (720/915 nt) | mrr | methylated adenine and cytosine restriction protein |
| ? | NC_000913 | 4587740 = | 207 (0.810) | coding (792/915 nt) | mrr | methylated adenine and cytosine restriction protein | |||||
| * | ? | NC_000913 | = 4551421 | 388 (1.430) | 8 (0.030) | 14/240 | NT | 2.1% | intergenic (‑125/‑215) | gntP/uxuA | fructuronate transporter/mannonate hydrolase |
| ? | NC_000913 | = 4551422 | 391 (1.540) | intergenic (‑126/‑214) | gntP/uxuA | fructuronate transporter/mannonate hydrolase | |||||
| * | ? | NC_000913 | = 4542690 | 218 (0.800) | 9 (0.040) | 9/240 | NT | 3.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 304 (1.200) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 211 (0.780) | 12 (0.050) | 12/240 | NT | 4.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 304 (1.200) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4534768 = | 309 (1.140) | 10 (0.040) | 8/250 | NT | 3.3% | intergenic (‑93/‑23) | yjhZ/yjhR | pseudogene, rimK paralog, C‑terminal fragment/pseudogene, helicase family; putative frameshift suppressor |
| ? | NC_000913 | 4534790 = | 291 (1.100) | intergenic (‑115/‑1) | yjhZ/yjhR | pseudogene, rimK paralog, C‑terminal fragment/pseudogene, helicase family; putative frameshift suppressor | |||||
| * | ? | NC_000913 | = 4534139 | 303 (1.110) | 7 (0.030) | 5/238 | NT | 2.4% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 298 (1.190) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | = 4497499 | 310 (1.140) | 4 (0.020) | 4/246 | NT | 1.3% | pseudogene (825/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| ? | NC_000913 | = 4497525 | 292 (1.130) | pseudogene (851/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase | |||||
| * | ? | NC_000913 | 4497494 = | 294 (1.080) | 5 (0.020) | 4/246 | NT | 1.7% | pseudogene (820/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| ? | NC_000913 | 4497532 = | 292 (1.130) | pseudogene (858/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase | |||||
| * | ? | NC_000913 | 4467477 = | 286 (1.050) | 4 (0.020) | 4/242 | NT | 1.5% | coding (47/54 nt) | mgtL | regulatory leader peptide for mgtA |
| ? | NC_000913 | 4467511 = | 261 (1.020) | intergenic (+27/‑114) | mgtL/mgtA | regulatory leader peptide for mgtA/magnesium transporter | |||||
| * | ? | NC_000913 | 4444443 = | 254 (0.930) | 11 (0.040) | 11/258 | NT | 4.2% | coding (332/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| ? | NC_000913 | = 4503515 | NA (NA) | noncoding (1/1426 nt) | IS4 | repeat region | |||||