| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1357754 = | NA (NA) | 4 (0.060) | 4/160 | NT | NA | intergenic (‑86/+48) | ymjA/puuP | DUF2543 family protein/putrescine importer |
| ? | NC_000913 | 1357793 = | NA (NA) | noncoding (24/30 nt) | REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1357860‑1357754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcgcATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC > NC_000913/1357793‑1357888 GCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGC > 1:1471791/1‑100 CGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGC < 1:1796605/100‑1 TATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGC < 1:997450/100‑1 ATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGC < 1:2049547/100‑1 GCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATA > 2:1780624/1‑100 CGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACAGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAG > 1:159140/1‑100 GCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCG > 1:768522/1‑100 GCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACCTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC < 2:1132583/100‑1 GCGCATCCGACTATTACGTTTCACTCACCGGCGTCCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAACTATACGCCGCC < 2:1092946/100‑1 GCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1357860‑1357754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcgcATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC > NC_000913/1357793‑1357888 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |