| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1357754 = | NA (NA) | 4 (0.060) | 4/160 | NT | NA | intergenic (‑86/+48) | ymjA/puuP | DUF2543 family protein/putrescine importer |
| ? | NC_000913 | 1357793 = | NA (NA) | noncoding (24/30 nt) | REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TATCGTGGTTCATTATTTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGC > NC_000913/1357656‑1357851 | tatCGTGGTTCATTATTTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATggc > 1:1833263/1‑100 (MQ=255) ggcggcgtatagttatggtatctgatccgccgctatcgcaaagtgccgttgtatgatggtgacaggacgccggtgagtgaaacgtaatagtcggatgcgc < 2:1092946‑M1/4‑1 (MQ=255) ggcggcgcatatttatggtatctgatccgccgctatcgcaaggtgccgttgtatgatggtgacagaacgccggtgagtgaaacgtaatagtcggatgcgc < 2:1132583‑M1/4‑1 (MQ=255) gTGGTTCATTATTTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGGCATACATCTTTTTATAGTTAATggcgcgg > 1:1892434/1‑100 (MQ=255) ttCATTATTTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGgcgcggcgcg < 2:644463/100‑1 (MQ=255) cATTATTTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATACGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGtt > 2:93672/1‑100 (MQ=255) attattTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTa < 2:958534/100‑1 (MQ=255) attTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGTGCGGCGCGTTAcc > 1:1279781/1‑99 (MQ=255) tttGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTCTCGTTAATGGCGCGGCGCGTTACCCt > 1:690534/1‑100 (MQ=255) ttGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTAc < 2:676524/96‑1 (MQ=255) ttGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGACGCGTTACCCTc > 2:587858/1‑100 (MQ=255) tGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTca < 1:575889/100‑1 (MQ=255) tGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTca < 1:755649/100‑1 (MQ=255) cccTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTcaggc < 1:568720/100‑1 (MQ=255) cccTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTcaggc > 2:1624826/1‑100 (MQ=255) ccTCGGGTTAATGCGCTCAGCATAAGGGCGGATGATAGCACACGTGATCCGGGTCATACAGCTTTTTATACTTAACGTCGCGGCGCGTTACCCTcaggc < 2:689262/99‑1 (MQ=255) cTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCTCGTTACCCTcaggcag > 2:1214078/1‑100 (MQ=255) tGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTcaggcagg > 2:1471781/1‑100 (MQ=255) ggggTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGa < 2:1102456/100‑1 (MQ=255) gggTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGAt < 2:868786/100‑1 (MQ=255) gTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATaa > 2:1921196/1‑100 (MQ=255) gTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATaa > 1:624981/1‑100 (MQ=255) ttAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAAt < 2:1870594/100‑1 (MQ=255) aaTGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATgc < 2:1520795/100‑1 (MQ=255) cgctatcgcaaagtgccgttgtatgatggtgacagaacgccggtgagtgaaacgtaatagtcggatGCGCGGCGCGTTACCCTCAGGCAGGATAATgcgc > 1:768522‑M1/67‑100 (MQ=255) ctatcgcaaagtgccgttgtatgatggtgacagaacgcctgtgagtgaaacgtaatagtcggatGCGCGGCGCGTTACCCTCAGGCAGGATAATGcgccg > 1:159140‑M1/65‑100 (MQ=255) tatcgcaaagtgccgttgtatgatggtgacagaacgccggtgagtgaaacgtaatagtcggatGCGCGGCGCGTTACCCTCAGGCAGGATAATGcgccgc > 2:1780624‑M1/64‑100 (MQ=255) aaGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGAGGCGCGTTACCCTCAGGCAGGATAATGCGCCgcgc > 1:1460555/1‑99 (MQ=255) gcaaagtgccgttgtatgatggtgacagaacgccggtgagtgaaacgtaatagtcggatGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCAt < 1:2049547‑M1/41‑1 (MQ=255) gCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATc > 1:450636/1‑100 (MQ=255) tAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGa > 2:665367/1‑100 (MQ=255) gggCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTa > 2:659064/1‑100 (MQ=255) ggCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTAt > 1:1796816/1‑100 (MQ=255) cGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTa < 1:1946236/100‑1 (MQ=255) ggATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTAc > 1:1279110/1‑100 (MQ=255) gatAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGttt > 2:1959413/1‑100 (MQ=255) gatAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGttt < 2:558313/100‑1 (MQ=255) atAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCATGATAATGCGCCGCGCATCCGACTATTACGTTtc > 2:981911/1‑100 (MQ=255) atAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTtc < 2:789652/100‑1 (MQ=255) atAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTtc < 2:716943/100‑1 (MQ=255) atAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTtc > 2:1470351/1‑100 (MQ=255) atAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTtc < 1:130908/100‑1 (MQ=255) atAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTtc < 2:1484243/100‑1 (MQ=255) atAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTtc < 2:599017/100‑1 (MQ=255) tAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGATACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGCTtca > 2:896791/1‑100 (MQ=255) aGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTtcac > 2:1178352/1‑100 (MQ=255) aGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTtcac < 2:809862/100‑1 (MQ=255) aGCACTCGTGATCCGGGTCATACATCTATTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTtcac < 2:1700638/100‑1 (MQ=255) gCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTtcact > 1:1146713/1‑100 (MQ=255) gCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTtcact > 2:678866/1‑100 (MQ=255) tGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGc > 1:1991262/1‑100 (MQ=255) gATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCg > 2:760244/1‑100 (MQ=255) gATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCg > 1:793050/1‑100 (MQ=255) gATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCg > 1:794644/1‑100 (MQ=255) ccGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTc > 2:1919447/1‑100 (MQ=255) ccGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTc < 1:813848/100‑1 (MQ=255) gggTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTg < 2:312151/100‑1 (MQ=255) gggTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTg > 1:1678789/1‑100 (MQ=255) ggTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGt < 2:334368/100‑1 (MQ=255) gTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTc < 1:1897702/100‑1 (MQ=255) aCATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACcat < 1:359604/100‑1 (MQ=255) cATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACcatc > 1:1453627/1‑100 (MQ=255) cTTTTTATAGTTAATGGCGCGGCGCGGTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGGTTCACTCACCGGCGTTCTGTCACCATCATa > 1:1132588/1‑100 (MQ=255) ttttATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACa < 1:465394/100‑1 (MQ=255) tataGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACg < 1:1464880/100‑1 (MQ=255) ataGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACgg < 1:1700522/100‑1 (MQ=255) ataGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACgg < 1:1402886/100‑1 (MQ=255) ataGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACgg > 2:1083282/1‑100 (MQ=255) gTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCAc > 1:1068352/1‑100 (MQ=255) tAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACtt > 1:1856710/1‑100 (MQ=255) tAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACtt > 1:60587/1‑100 (MQ=255) tGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGc > 1:1026638/1‑100 (MQ=255) | TATCGTGGTTCATTATTTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGC > NC_000913/1357656‑1357851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |