| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1852545 = | NA (NA) | 5 (0.070) | 4/156 | NT | NA | intergenic (+17/+76) | pncA/ydjE | nicotinamidase/pyrazinamidase/putative MFS sugar transporter, membrane protein |
| ? | NC_000913 | 1852562 = | NA (NA) | noncoding (1/36 nt) | REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TGGAAGAGATTTCTGAGGTGAATTAAATCTTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTgtaggcca‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1852646‑1852545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTCGAT > NC_000913/1852562‑1852668 TGGAAGAGATTTCTGAGGTGAATTAAATCTTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAA < 1:708311/100‑1 GGAAGAGATTTCTGAGGTGAATTAAGTCTTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAAT < 2:1741544/100‑1 GGAAGAGATTTCTGAGGTGAATTAAATCTTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAAT < 2:1484650/100‑1 AGAGATTTCTGAGGTGAATTAAATCTTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGT < 1:1566320/100‑1 AGAGATTTCTGAGGTGAATTAAATCTTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGT > 2:1080018/1‑100 GAGATTTCTGAGGTGAATTAAATCTTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTA > 1:1688324/1‑100 AGATTTCTGAGGTGAATTAAATCTTTCGTTGATGGCATCAATTGCCGGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTAG > 2:1155638/1‑100 AGATTTCTGAGGTGAATTAAATCTTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTAG < 1:652360/100‑1 ATTTCTGAGGTGAATTAAATCTTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTAGGC < 2:209262/100‑1 ATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATT > 2:1084319/1‑100 TGGCCTACAATGCCAGTACAGAATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAA > 1:1490374/1‑100 GGCCTACAATGCCAGTACAGAATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAA > 1:1903195/1‑100 CCTACAATGCCAGTACAGAATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATAACATCAACGAAAGATTTAATTCACCTCAGAAA > 2:1394422/1‑98 CCTACAATGCCAGAACAGAATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATC > 1:1394096/1‑100 ATTGTAGGCCAAATAAAACACGTCAGGGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCC < 2:1626652/100‑1 GTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCG > 1:1569683/1‑100 GGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCGTCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTT > 1:971624/1‑100 GGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTT > 1:337304/1‑100 GCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTn < 2:557644/100‑2 GCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTC > 1:731076/1‑100 GCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTC > 1:716044/1‑100 GCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTC > 1:1662343/1‑100 GCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTC < 2:42118/100‑1 CCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTCG > 1:1534790/1‑100 CAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCAATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTCGA > 2:999352/1‑100 AAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTCGAT > 1:805474/1‑100 TGGAAGAGATTTCTGAGGTGAATTAAATCTTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTgtaggcca‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1852646‑1852545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTCGAT > NC_000913/1852562‑1852668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |