New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1852545 =NA (NA)5 (0.070) 4/156 NT NA intergenic (+17/+76) pncA/ydjE nicotinamidase/pyrazinamidase/putative MFS sugar transporter, membrane protein
?NC_000913 1852562 = NA (NA)noncoding (1/36 nt) REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences

CAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCT  >  NC_000913/1852447‑1852642
                                                                                                  |                                                                                                 
cAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACaa                                                                                                  <  1:5378/100‑1 (MQ=255)
cAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACaa                                                                                                  >  2:138416/1‑100 (MQ=255)
 ggaaggtgtcgttggaagagatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgcccctgacgtgttttatttggcctacAAt                                                                                                 <  2:1626652‑M1/3‑1 (MQ=255)
  gTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAAt                                                                                                 >  2:657174/1‑99 (MQ=255)
   tGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTc                                                                                               <  2:410724/100‑1 (MQ=255)
    gcgcACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCt                                                                                              >  1:879477/1‑100 (MQ=255)
     cgcACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTg                                                                                             <  2:1850862/100‑1 (MQ=255)
     cgcACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTg                                                                                             <  2:321553/100‑1 (MQ=255)
      gcACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGt                                                                                            <  1:1056352/100‑1 (MQ=255)
      gcACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGAGTAATTTTACGCTGGCCTACAATTCTGt                                                                                            >  1:1767684/1‑100 (MQ=255)
       naCGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTa                                                                                           >  1:557648/2‑100 (MQ=255)
           cgTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTgg                                                                                       <  1:1335456/100‑1 (MQ=255)
           cgTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTgg                                                                                       <  1:164251/100‑1 (MQ=255)
           cgTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTgg                                                                                       >  1:1856729/1‑100 (MQ=255)
            gTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGc                                                                                      <  2:379677/100‑1 (MQ=255)
              ttATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCAt                                                                                    <  1:78008/100‑1 (MQ=255)
              ttATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCAt                                                                                    <  2:1624636/100‑1 (MQ=255)
               tATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCAtt                                                                                   >  2:62047/1‑100 (MQ=255)
                 tGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGt                                                                                 <  2:1356270/100‑1 (MQ=255)
                 tGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGt                                                                                 >  2:1547266/1‑100 (MQ=255)
                 tGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGt                                                                                 >  1:608486/1‑100 (MQ=255)
                 tGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGt                                                                                 >  1:608031/1‑100 (MQ=255)
                 tGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGt                                                                                 >  1:457669/1‑100 (MQ=255)
                  ggAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTa                                                                                >  1:795272/1‑100 (MQ=255)
                   gagaTGTTAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAg                                                                               <  1:1882536/100‑1 (MQ=255)
                   gagaTGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAg                                                                               >  1:713278/1‑100 (MQ=255)
                    gatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTTCTGGCATTGTAgg                                                                              >  1:1394096‑M1/79‑100 (MQ=255)
                    agaTGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAgg                                                                              >  2:1405829/1‑100 (MQ=255)
                     gaTGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGc                                                                             >  2:264137/1‑100 (MQ=255)
                     gaTGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGc                                                                             >  1:194882/1‑100 (MQ=255)
                      tttctgaggtgaattaaatctttcgttgatgttatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAgg                                                                              >  2:1394422‑M1/77‑98 (MQ=255)
                      tttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGcc                                                                            >  1:1903195‑M1/77‑100 (MQ=255)
                       ttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGCCa                                                                           >  1:1490374‑M1/76‑100 (MQ=255)
                       tGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCa                                                                           >  1:709014/1‑100 (MQ=255)
                          cagcagCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAAt                                                                        >  2:1714873/1‑100 (MQ=255)
                           agcagcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATa                                                                       <  2:1500774/100‑1 (MQ=255)
                           agcagcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATa                                                                       >  1:1926651/1‑100 (MQ=255)
                            gcagcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATaa                                                                      >  2:1688312/1‑100 (MQ=255)
                               gcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGAGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAac                                                                   <  2:1767671/100‑1 (MQ=255)
                                  ggggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACg                                                                <  2:1309905/100‑1 (MQ=255)
                                  ggggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACg                                                                >  1:42120/1‑100 (MQ=255)
                                    ggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTc                                                              >  2:275469/1‑100 (MQ=255)
                                      cAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAg                                                            >  1:602734/1‑100 (MQ=255)
                                      cAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAg                                                            >  1:434822/1‑100 (MQ=255)
                                      cAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACGGGCATTGTAGGCCAAATAAAACACGTCAg                                                            >  2:1167398/1‑100 (MQ=255)
                                        aCGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTg                                                          >  2:1371821/1‑100 (MQ=255)
                                          gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc                                                        <  2:1174611/100‑1 (MQ=255)
                                            tatataCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGcac                                                      >  1:1073455/1‑100 (MQ=255)
                                              tataCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACAt                                                    >  1:277035/1‑100 (MQ=255)
                                                  cGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTgg                                                >  1:1736774/1‑100 (MQ=255)
                                                  cGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTgg                                                >  2:1702526/1‑100 (MQ=255)
                                                  cGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTgg                                                >  1:1759056/1‑100 (MQ=255)
                                                   gCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGc                                               <  2:1552255/100‑1 (MQ=255)
                                                   gCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGc                                               <  1:1844709/100‑1 (MQ=255)
                                                      ggCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAt                                            >  1:117975/1‑100 (MQ=255)
                                                      ggCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAt                                            >  2:1508384/1‑100 (MQ=255)
                                                      ggCAGACTGGGAAGAGACACAGGGGGAATTTTACGCTGGCCTACAATTCTGTACGGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCGGGCAAt                                            >  2:1521046/1‑100 (MQ=255)
                                                       gCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAtt                                           >  1:909733/1‑100 (MQ=255)
                                                       gCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAtt                                           >  2:1871467/1‑100 (MQ=255)
                                                         aGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGa                                         <  1:653336/100‑1 (MQ=255)
                                                          aattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGAt                                        >  2:1084319‑M1/41‑100 (MQ=255)
                                                           aCTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATg                                       <  2:33345/100‑1 (MQ=255)
                                                           aCTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATg                                       <  2:133389/100‑1 (MQ=255)
                                                            cTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGc                                      <  1:718435/100‑1 (MQ=255)
                                                            cTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAACAAAACACGTCAGTGGCACATCTGGCAATTGATGc                                      >  2:1097189/1‑100 (MQ=255)
                                                               ggAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCAt                                   >  2:1558565/1‑100 (MQ=255)
                                                                gAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATc                                  <  2:608027/100‑1 (MQ=255)
                                                                gAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATc                                  <  2:608482/100‑1 (MQ=255)
                                                                 aaGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCa                                 >  1:1551426/1‑100 (MQ=255)
                                                                   gagaCACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAAc                               <  2:811730/100‑1 (MQ=255)
                                                                    agaCACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACg                              <  2:1017939/100‑1 (MQ=255)
                                                                     gaCACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGa                             <  1:1714885/100‑1 (MQ=255)
                                                                       cacaGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGGAATTGATGCCATCAACGaaa                           <  2:1272985/100‑1 (MQ=255)
                                                                         caGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGa                         >  2:1063493/1‑100 (MQ=255)
                                                                         caGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGa                         <  2:277032/100‑1 (MQ=255)
                                                                         caGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGa                         >  2:313567/1‑100 (MQ=255)
                                                                          aGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGAt                        >  2:1072240/1‑100 (MQ=255)
                                                                            gggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGAttt                      <  2:33049/100‑1 (MQ=255)
                                                                                  ttttACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCa                <  1:1508394/100‑1 (MQ=255)
                                                                                  tggtACGCTGGGCTACATGGCGGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTc                 <  1:380607/96‑1 (MQ=255)
                                                                                   tttACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACGTCTGGCAATTGATGCCATCAACGAAAGATTTAATTCAc               >  2:1130161/1‑100 (MQ=255)
                                                                                        gCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAg          >  1:1215612/1‑100 (MQ=255)
                                                                                        gCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAg          <  1:233054/100‑1 (MQ=255)
                                                                                         cTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGa         >  2:222846/1‑100 (MQ=255)
                                                                                            gcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAt      <  2:209262‑M1/94‑1 (MQ=255)
                                                                                              ctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtct    <  1:652360‑M1/96‑1 (MQ=255)
                                                                                              ctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCCGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtct    >  2:1155638‑M1/5‑100 (MQ=255)
                                                                                               tacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtctc   >  1:1688324‑M1/4‑100 (MQ=255)
                                                                                                acAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATctct  <  1:1566320‑M1/98‑1 (MQ=255)
                                                                                                acAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATctct  >  2:1080018‑M1/3‑100 (MQ=255)
                                                                                                  |                                                                                                 
CAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCT  >  NC_000913/1852447‑1852642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.