New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3962704 =	NA (NA)	3 (0.040)	3/166	NT	NA	noncoding (5/36 nt)	REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	3962736 =	NA (NA)					intergenic (+38/+9)	rep/gpp	DNA helicase and single‑stranded DNA‑dependent ATPase/guanosine pentaphosphatase/exopolyphosphatase

AGAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3962808‑3962704 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGCC  >  NC_000913/3962736‑3962833                                                                                                                                                                                                             AGAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTT                                                                                                         >  1:606051/1‑100  GAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTC                                                                                                        <  2:1579963/100‑1      TTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGC                                                                                                    >  1:955279/1‑100                                                                  GAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTG                                        >  1:1067851/1‑100                                                                      AAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCA                                    >  2:2007890/1‑100                                                                          GCCGGATGCGATGCTGACGCATCTTTTCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAA                                >  2:1486999/1‑100                                                                                                    TCCGGCACATACTCAGTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTT      <  2:1727498/100‑1                                                                                                        GCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGCC  <  2:828953/100‑1                                                                                                                                                                                                             AGAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3962808‑3962704 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGCC  >  NC_000913/3962736‑3962833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.