| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3708321 | NA (NA) | 5 (0.050) | 4/164 | NT | NA | noncoding (50/86 nt) | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3708353 | NA (NA) | noncoding (82/86 nt) | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
ATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3708223‑3708321‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTGCCAAAT < NC_000913/3708353‑3708248 ATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTG < 2:909334/100‑1ATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTG < 2:2288615/100‑1 TGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGC > 1:1963352/1‑100 GGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCC < 1:1185984/100‑1 GGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCC < 2:570358/100‑1 GGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCC < 1:38571/100‑1 GGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGC > 1:749719/1‑99 GATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCT > 1:2068718/1‑100 ATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTG < 1:48359/100‑1 AGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGAT < 1:221979/100‑1 AGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGAT < 2:904608/100‑1 AGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGAT < 2:1179503/100‑1 AGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGAATCCGACAATGGCCGGCACATTTGCCTG > 2:1198399/1‑98 TGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCAGATcggaagagc > 2:2392027/1‑91 GCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATAAGACGCGTCAGCGTCGCATCAGG < 1:1526926/100‑1 CAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATAAGACGCGTCAGCGTCGCATCAGGC < 1:2157615/100‑1 CAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATAAGACGCGTCAGCGTCGCATCAGGC < 1:2540900/100‑1 AGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATAAGACGCGTCAGCGTCGCATCAGGCA < 1:1688853/100‑1 GGAAATGTGTTTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAAA < 1:507560/100‑1 GCCTGATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTG > 1:1264167/1‑100 GCCTGATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTG < 2:2685134/100‑1 GCCTGATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTG < 1:2121962/100‑1 GCCTGATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTG < 1:1340621/100‑1 CCTGATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTGC > 2:2659907/1‑100 CCTGATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTGC > 1:1052621/1‑100 CCTGATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTGC > 1:975446/1‑100 CTGATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTGCC < 1:470378/100‑1 TGATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTGCCA > 1:2528228/1‑100 GATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTGCCAA > 1:2168094/1‑100 TAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTGCCAAAT < 2:1608648/100‑1 TAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTGCCAAAT > 1:774341/1‑100 ATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3708223‑3708321‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGTCAGCGTCGCATCAGGCAAATGTGCCGGCCATTGTCGGATGCGGCGCGACCGCCTTATTCGACCTACACGACACACATTTCCCTGCCAAAT < NC_000913/3708353‑3708248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |