| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 551477 = | 117 (1.170) | 12 (0.220) +AGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAG |
4/98 | NT | 15.8% | noncoding (124/157 nt) | REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 4374596 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/551512‑551477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATTCGCTACGCTTATCAGGCCTA < NC_000913/4374596‑4374569 |||||||||||||||||||||||||||||||||||||||| TTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGG < 1:643458/100‑1TTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGG < 2:1960507/100‑1TTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGG < 2:604932/100‑1 TGCCGGATGCAGCTTAAACGCCTTATCCGGCCTACAGTTCATTTCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC < 1:803286/100‑1 TGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC < 1:2261590/100‑1 TGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC < 1:579706/100‑1 TGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC < 2:1874636/100‑1 TGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC < 2:966644/100‑1 GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC < 1:1312758/99‑1 CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGCCTA < 1:1280683/100‑1 CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGCCT < 1:808928/99‑1 CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCATGATTCGCTACGCTTATCAGGCCTA < 2:1687428/100‑1 |||||||||||||||||||||||||||||||||||||||| TTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/551512‑551477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATTCGCTACGCTTATCAGGCCTA < NC_000913/4374596‑4374569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |