New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 551477 =117 (1.170)12 (0.220)
+AGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAG
4/98 NT 15.8% noncoding (124/157 nt) REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 4374596 NA (NA)noncoding (99/99 nt) RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 131 total aligned reads displayed.

TGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAATTTCTCGCGCCAG  >  NC_000913/4374497‑4374694
                                                                                                   |                                                                                                  
tGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGc                                                                                                    >  1:328053/1‑100 (MQ=255)
 gCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCCAATCCAGTCAATTTCAGTGCACGCTGTAGGCCTGATAAGCGACGCGAATCAGGCa                                                                                                   >  2:537505/1‑100 (MQ=25)
 gCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCa                                                                                                   >  2:890859/1‑100 (MQ=255)
 gCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCa                                                                                                   >  2:101062/1‑100 (MQ=255)
    ggATGCAGCGTAAACGCCTTATCCGGCCTACAATTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAAtt                                                                                                >  1:2609339/1‑100 (MQ=255)
        gCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTaa                                                                                            >  1:2078908/1‑100 (MQ=255)
         cAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCGAATCCATTCAATTTCAATGCACGATGTATGCCTGATAAGCGTAGCGAATCAGGCAATTTTAAt                                                                                           >  2:2381331/1‑100 (MQ=255)
         cAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTATGTCTGATAATCGTAGCGAATCAGGCAATTTTAAt                                                                                           >  2:1706297/1‑100 (MQ=255)
         cAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTaa                                                                                            >  1:2576229/1‑99 (MQ=255)
         cAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAAt                                                                                           >  2:1359958/1‑100 (MQ=255)
          aGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTaacg                                                                                          >  2:1776319/1‑98 (MQ=255)
           gCGTAAACGCCTTATCCGCCCTACAGTTCATTGCAAATCCATTCAATATCAAGGCACGATCTAAACCTGATAAACGTAGAGAATCAGGCAATTCTAAt                                                                                           >  2:652306/1‑98 (MQ=37)
             gTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGttt                                                                                       <  1:2095339/100‑1 (MQ=255)
              tAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTa                                                                                      <  1:1702322/100‑1 (MQ=255)
                aaCGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAAc                                                                                    <  1:305697/100‑1 (MQ=255)
                aaCGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAACCGTAGCGAATCAGGCAATTTTAATGTTTAAc                                                                                    >  2:1662116/1‑100 (MQ=255)
                 aCGCCTTATCCGGCCTACAGTTCATTGCAAATCCCTTCAATTTCCATGCACGATGTAGGCCTGATAAGAGTAGCGAATCAGGCAATTTTAATGTTTAAc                                                                                    >  2:1485936/1‑99 (MQ=255)
                 aCGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACt                                                                                   <  2:508394/100‑1 (MQ=255)
                   gCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTc                                                                                 >  1:1014309/1‑100 (MQ=255)
                    ccTTATCCGGCCTGCAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTcc                                                                                >  1:1871155/1‑100 (MQ=255)
                     cTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTccc                                                                               <  1:451268/100‑1 (MQ=255)
                       tATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTg                                                                             <  1:1702189/100‑1 (MQ=255)
                       tATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTg                                                                             <  2:1988509/100‑1 (MQ=255)
                        aTCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGt                                                                            >  1:1847588/1‑100 (MQ=255)
                        aTCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGt                                                                            >  1:2591577/1‑100 (MQ=255)
                        aTCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGt                                                                            >  1:2348172/1‑100 (MQ=255)
                         tCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGtt                                                                           <  2:74646/100‑1 (MQ=255)
                              ccTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATc                                                                      <  1:1869278/100‑1 (MQ=255)
                              ccTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATc                                                                      <  2:850981/100‑1 (MQ=255)
                               cTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCa                                                                     <  2:972260/100‑1 (MQ=255)
                                tACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAg                                                                    <  1:446947/100‑1 (MQ=255)
                                  cAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGtt                                                                  <  1:103471/100‑1 (MQ=255)
                                  cAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAACTTTAATGTTTAACTTCCCTGTTTAATCAGtt                                                                  <  2:418689/100‑1 (MQ=255)
                                   aGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTa                                                                 <  2:1995658/100‑1 (MQ=255)
                                    gTTCATTGCAAATCCAGTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAAGCAGGGAATTTTAATGTGTAACTTCCCTGTTTAATCAGTTAc                                                                <  2:1244855/100‑1 (MQ=38)
                                     ttCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCAAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTAct                                                               <  1:113653/100‑1 (MQ=255)
                                     cgatctGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTAct                                                               <  1:640478/95‑1 (MQ=255)
                                      tCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTAct                                                               >  1:1197510/1‑99 (MQ=255)
                                       cATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTActgc                                                             <  1:2093649/100‑1 (MQ=255)
                                        nttGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTActgct                                                            >  2:1677082/2‑100 (MQ=255)
                                         ttGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTActgctg                                                           <  1:1894682/100‑1 (MQ=255)
                                         ttGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTActgctg                                                           >  1:1792195/1‑100 (MQ=255)
                                          tGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTgg                                                          <  1:2692642/100‑1 (MQ=255)
                                          tGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTgg                                                          >  2:1306833/1‑100 (MQ=255)
                                           gCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTActagatcg                                                         >  2:640476/1‑94 (MQ=255)
                                            cAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCg                                                        <  2:1711882/100‑1 (MQ=255)
                                            cAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCg                                                        <  1:375683/100‑1 (MQ=255)
                                            cAAATCCACTCAATTTCAATGCACGATGTAGGGCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCg                                                        <  2:1230007/100‑1 (MQ=255)
                                              aaTCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTa                                                      >  2:1079852/1‑100 (MQ=255)
                                                   aTTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTgg                                                 >  1:681273/1‑100 (MQ=255)
                                                   aTTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTgg                                                 <  1:2248262/100‑1 (MQ=255)
                                                   aTTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTgg                                                 >  1:1419482/1‑100 (MQ=255)
                                                    ttcaatttcaatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGga                                                <  2:741433/100‑1 (MQ=255)
                                                    ttcaatttcaatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGga                                                <  1:2312019/100‑1 (MQ=255)
                                                      caatttcaatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGgaga                                              >  2:615998/1‑100 (MQ=255)
                                                       aatttcaatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGAt                                             <  2:1392206/100‑1 (MQ=255)
                                                        atttcaatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATc                                            >  2:844412/1‑100 (MQ=255)
                                                         tttcaatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGgag                                               >  2:2359359/1‑96 (MQ=255)
                                                         tttcaatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATcc                                           <  1:2199039/100‑1 (MQ=255)
                                                         tttcaatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATcc                                           >  1:2652079/1‑100 (MQ=255)
                                                           tcaatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAg                                         <  2:2348157/100‑1 (MQ=255)
                                                            caatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAgc                                        <  1:322415/100‑1 (MQ=255)
                                                             aatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAgcg                                       <  1:577747/100‑1 (MQ=255)
                                                             aatGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAgcg                                       <  2:2380852/100‑1 (MQ=255)
                                                                gCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAgcggcg                                    >  1:844933/1‑100 (MQ=255)
                                                                gCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAgcggcg                                    <  1:742250/100‑1 (MQ=255)
                                                                       gTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCt                             >  1:1002624/1‑100 (MQ=255)
                                                                        tAGGCCTGATAAGCGTAGCGAATCAGGCctacatcgtgcattgaaattgaatggatttgcaatgaactgtaggccggataaggcgtttacgctgcatccg                            <  1:1280683‑M2/100‑73 (MQ=255)
                                                                        tAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTACCTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATGCAGTGGCGTTTTGCt                             >  2:1217566/1‑99 (MQ=255)
                                                                        tAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTg                            <  2:2112750/100‑1 (MQ=255)
                                                                        tAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATAAGTTAATGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTg                            >  2:1344740/1‑100 (MQ=255)
                                                                         aGGCCTGATAAGCGTAGCGAATCAGGCctacatcgtgcattgaaattgaatggatttgcaatgaactgtaggccggataaggcgtttacgctgcatccg                            <  1:808928‑M2/99‑73 (MQ=255)
                                                                          ggCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTggg                          >  1:449475/1‑100 (MQ=255)
                                                                          ggCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTggg                          >  2:1627419/1‑100 (MQ=255)
                                                                           gCCTGATAAGCGTAGCGAATCAGGCctacatcgtgcattgaaattgaatggatttgcaatgaactgtaggccggataaggcgtttacgctgcatccggca                         <  1:2261590‑M2/100‑76 (MQ=255)
                                                                           gCCTGATAAGCGTAGCGAATCAGGCctacatcgtgcattgaaattgaatggatttgcaatgaactgtaggccggataaggcgtttacgctgcatccggca                         <  2:1874636‑M2/100‑76 (MQ=255)
                                                                           gCCTGATAAGCGTAGCGAATCAGGCctacatcgtgcattgaaattgaatggatttgcaatgaactgtaggccggataaggcgtttacgctgcatccggca                         <  1:579706‑M2/100‑76 (MQ=255)
                                                                           gCCTGATAAGCGTAGCGAATCAGGCctacatcgtgcattgaaattgaatggatttgcaatgaactgtaggccggataaggcgtttacgctgcatccggca                         <  2:966644‑M2/100‑76 (MQ=255)
                                                                           gCCTGATAAGCGTAGCGAATCAGGCctacatcgtgcattgaaattgaatggatttgcaatgaactgtaggccggataaggcgtttacgctgcatccggc                          <  1:1312758‑M2/99‑75 (MQ=255)
                                                                           gCCTGATAAGCGTAGCGAATCAGGCctacatcgtgcattgaaattgaatggatttgaaatgaactgtaggccggataaggcgtttaagctgcatccggca                         <  1:803286‑M2/100‑76 (MQ=255)
                                                                            ccTGATAAGCGTAGCGAATCAGGCctacatcgtgcattgaaattgaatggatttgcaatgaactgtaggccggataaggcgtttacgctgcatccggcaa                        <  2:1960507‑M2/100‑77 (MQ=255)
                                                                            ccTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTggg                          <  2:880356/98‑1 (MQ=255)
                                                                              tGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTcg                      >  2:741845/1‑100 (MQ=255)
                                                                                aTAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTcgcc                    <  1:2494024/100‑1 (MQ=255)
                                                                                 tAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTcgccg                   <  2:2095387/100‑1 (MQ=255)
                                                                                  aaGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTcgccg                   <  2:1418038/99‑1 (MQ=255)
                                                                                   aGCGTAGCGAGTCAGGCAATTTTAATGTTTAACATCCATGTGTAGTCCGTTACGGCTGGGGTGGCTGGAGAGCTAGCGGCGTTTTGGTGGGTTcaccg                   >  2:2515139/1‑98 (MQ=255)
                                                                                    gCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCa                >  1:1214523/1‑100 (MQ=255)
                                                                                      gTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGCTTTGCTGGTTTCGCCGCCAAt              <  2:1868594/100‑1 (MQ=255)
                                                                                        aGCGAATCAGGCCAGTTTAATGTTTAACTTCCCTGTTTAATCAGGTACTGCGGGCGTAGCGCGACATCCATCGGCGTTTTGCTGGGTTCGCCGCCAAttt            >  2:2294130/1‑100 (MQ=255)
                                                                                        aGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAAttt            >  1:794517/1‑100 (MQ=255)
                                                                                            aaTCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAATTTCTcg        <  1:591029/100‑1 (MQ=255)
                                                                                             aTCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAATTTCTcgc       <  2:1426795/100‑1 (MQ=255)
                                                                                                aGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAATTTCTCGCGcc    >  1:1693163/1‑100 (MQ=255)
                                                                                                 ggCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAATTTCTCGCGcc    >  2:543283/1‑99 (MQ=255)
                                                                                                 ggCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAATTTCTCGCGCCa   >  1:198572/1‑100 (MQ=255)
                                                                                                 ggCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAATTTCTCGCGCCa   >  1:2172450/1‑100 (MQ=255)
                                                                                                 ggCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAATTTCTCGCGCCa   <  1:1549156/100‑1 (MQ=255)
                                                                                                  gCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAATTTCTCGCGCCAg  >  1:981587/1‑100 (MQ=255)
                                                                                                  gCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAATTTCTCGCGCCAg  <  1:1962242/100‑1 (MQ=255)
                                                                                                   |                                                                                                  
TGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCCGCCAATTTCTCGCGCCAG  >  NC_000913/4374497‑4374694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.