| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2282891 = | NA (NA) | 5 (0.050) | 4/164 | NT | NA | noncoding (5/34 nt) | REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2282921 = | NA (NA) | intergenic (+120/+19) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein | |||||
GGCACGCCGCCGAATTTGCGCGACCAATTGCAGCGCCGGACGTCTGGCGGCAATTAATCGGTTTTGTGTTCTGAATGCCAGATGCGGCGTGAACGCCTTATCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2282996‑2282891‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atctggcATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATTCGGCGGCGTGCCTTTAATGGTCAAGGTATCGGTT > NC_000913/2282921‑2283018 GGCACGCCGCCGAATTTGCGCGACCAATTGCAGCGCCGGACGTCTGGCGGCAATTAATCGGTTTTGTGTTCTGAATGCCAGATGCGGCGTGAACGCCTTA > 1:1268147/1‑100GGCACGCCGCCGAATTTGCGCGACCAATTGCAGCGCCGGACGTCTGGCGGCAATTAATCGGTTTTGTGTTCTGAATGCCAGATGCGGCGTGAACGCCTTA > 2:1912686/1‑100 CACGCCGCCGAATTTGCGCGACCAATTGCAGCGCCGGACGTCTGGCGGCAATTAATCGGTTTTGTGTTCTGAATGCCAGATGCGGCGTGAACGCCTTATC < 2:786347/100‑1 ACGCCGCCGAATTTGCGCGACCAATTGCAGCGCCGGACGTCTGGCGGCAATTAATCGGTTTTGTGTTCTGAATGCCAGATGCGGCGTGAACGCCTTATCT < 2:2672646/100‑1 CGCCGCCGAATTTGCGCGACCAATTGCAGCGCCGGACGTCTGGCGGCAATTAATCGGTTTTGTGTTCTGAATGCCAGATGCGGCGTGAACGCCTTATCTG < 2:2540431/100‑1 CCGCCGAATTTGCGCGACCAATTGCAGCGCCGGACGTCTGGCGGCAATTAATCGGTTTTGTGTTCTGAATGCCAGGTGCGGCGTGAACGCCTTATCTGGC > 2:228958/1‑100 TTTGCGCGACCAATTGCAGCGCCGGACGTCTGGCGGCAATTAATCGGTTTTGTGTTCTGAATGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAA < 1:936691/100‑1 AATGCCAGATGCGGCGTGAACGCCTTATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATTCGG > 1:2310980/1‑100 AATGCCAGATGCGGCGTGAACGCCTTATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATTCGG > 1:844182/1‑100 ATGCCAGATGCGGCGTGAACGCCTTATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATTCGGC > 1:2440055/1‑100 CCAGATGCGGCGTGAACGCCTTATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATTCGGCGGC > 1:2171222/1‑100 CTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATTCGGCGGCGTGCCTTTAATGGTCAAGGTATCG > 1:2707893/1‑100 GGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATTCGGCGGCGTGCCTTTAATGGTCAAGGTATCGGT < 1:2464826/100‑1 GGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATTCGGCGGCGTGCCTTTAATGGTCAAGGTATCGGT < 2:2564142/100‑1 GCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATTCGGCGGCGTGCCTTTAATGGTCAAGGTATCGGTT < 1:2557429/100‑1 GGCACGCCGCCGAATTTGCGCGACCAATTGCAGCGCCGGACGTCTGGCGGCAATTAATCGGTTTTGTGTTCTGAATGCCAGATGCGGCGTGAACGCCTTATCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2282996‑2282891‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atctggcATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATTCGGCGGCGTGCCTTTAATGGTCAAGGTATCGGTT > NC_000913/2282921‑2283018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |