| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2393130 = | NA (NA) | 9 (0.090) | 8/170 | NT | NA | intergenic (‑89/+75) | nuoM/nuoL | NADH:ubiquinone oxidoreductase, membrane subunit M/NADH:ubiquinone oxidoreductase, membrane subunit L |
| ? | NC_000913 | 2393163 = | NA (NA) | noncoding (33/36 nt) | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACActac‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2393228‑2393130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCCACA > NC_000913/2393163‑2393265 GCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACAC > 1:2674442/1‑100 CACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATGTAAGAACGTAGGTCGGATAAGCCGCCTTCGCCGAGCATCCGACACT > 2:244541/1‑100 CACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACT > 2:317254/1‑100 CACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACT > 2:830211/1‑100 CACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACT > 2:1387450/1‑100 CACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACT > 1:723367/1‑100 ACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTA < 2:1100330/100‑1 GTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACac > 2:1041497/1‑98 ATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTA > 1:1103342/1‑100 AAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCAT > 1:1185879/1‑100 AGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATC > 1:471522/1‑100 GAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCA > 1:2394586/1‑100 GAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCA > 1:212336/1‑100 GTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGT > 2:750089/1‑100 GGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCC > 1:463490/1‑100 GTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCA > 2:2603663/1‑100 CGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAG > 1:1261830/1‑100 CTACGTTCTTATATGCCCAGGGTCAATCCCACAATCCTTATCTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCC < 1:559838/100‑1 CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCC < 2:996726/100‑1 CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCC < 1:1029407/100‑1 CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCC < 2:196112/100‑1 CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCC < 1:927633/100‑1 ACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCCAC > 2:2375496/1‑100 ACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCCAC < 2:1592661/100‑1 ACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCCAC < 1:1827674/100‑1 ACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCCAC < 1:1038752/100‑1 CGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAGCTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGGTGCCACA > 2:1474789/1‑100 CGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCCACA < 2:64714/100‑1 CGTTCTTATATGCCCAGGGGCAATCCCACAATCCTCAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCCACA < 2:451293/100‑1 CGTTCTTATATGCCCAGGGGCAATCCAACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCCACA > 2:1827685/1‑100 GCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACActac‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2393228‑2393130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCCACA > NC_000913/2393163‑2393265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |