BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2393130 =	NA (NA)	9 (0.090)	8/170	NT	NA	intergenic (‑89/+75)	nuoM/nuoL	NADH:ubiquinone oxidoreductase, membrane subunit M/NADH:ubiquinone oxidoreductase, membrane subunit L
*	?	NC_000913	2393163 =	NA (NA)	9 (0.090)	8/170	NT	NA	noncoding (33/36 nt)	REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 134 total aligned reads displayed.

GTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCC  >  NC_000913/2393032‑2393229

 tagtaACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATACTCACGACCGAAAATTCGCTTCGGACTGGGGGTAgtg                                                                                                    >  2:1437123/1‑99 (MQ=255)

  agtaACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTc                                                                                                  <  2:1329420/100‑1 (MQ=255)

  agtaACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTc                                                                                                  <  1:1463441/100‑1 (MQ=255)

   gtaACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCg                                                                                                 <  1:829911/100‑1 (MQ=255)

   gtaACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCg                                                                                                 >  1:551701/1‑100 (MQ=255)

     aaCATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGa                                                                                               <  1:559423/100‑1 (MQ=255)

     aaCATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGa                                                                                               >  1:1456884/1‑100 (MQ=255)

      aCATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGAt                                                                                              <  1:721737/100‑1 (MQ=255)

        aTGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATg                                                                                             >  2:1029403/1‑99 (MQ=255)

        aTGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGc                                                                                            >  2:2615758/1‑100 (MQ=255)

          ggCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGAtaagc                                                                                          >  1:1037726/1‑96 (MQ=255)

           gCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCAcc                                                                                         >  1:864906/1‑100 (MQ=255)

             gATCGTTATTCCCTGTAACATTCCCGTCAGGACCGGATTTTCAACGAAGTTTCACTACATAAAATTCTCTTCCGACTGGGGGTAGTGTCGGATGCACcgc                                                                                       <  2:2206304/100‑1 (MQ=255)

              aTCTTTATTCCTTGTAAAAGTCCCGCCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACcgcg                                                                                      <  1:599360/100‑1 (MQ=255)

                 tttATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGaa                                                                                    >  2:2201024/1‑99 (MQ=255)

                 tttATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAg                                                                                   >  1:1831217/1‑100 (MQ=255)

                    aTTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAggcg                                                                                >  2:1827667/1‑100 (MQ=255)

                    aTTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAggcg                                                                                <  2:2158730/100‑1 (MQ=255)

                     ttCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAggcgg                                                                               >  1:1770713/1‑100 (MQ=255)

                       ccTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGCACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCt                                                                             <  1:1938403/100‑1 (MQ=255)

                        cTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCtt                                                                            >  1:1387456/1‑100 (MQ=255)

                        cTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCtt                                                                            >  1:2280533/1‑100 (MQ=255)

                         ttGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTa                                                                           >  1:1341405/1‑100 (MQ=255)

                           gTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATc                                                                         >  1:1721033/1‑100 (MQ=255)

                           gTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATc                                                                         <  2:2321950/100‑1 (MQ=255)

                           gTAAAAGGCCCGTCAGGACCGGATTTGCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATc                                                                         <  2:433738/100‑1 (MQ=255)

                            tAAAATTCCCGTCAGGACCGGATTTTCATCGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATcc                                                                        <  2:1357280/100‑1 (MQ=255)

                            tAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATcc                                                                        <  2:441696/100‑1 (MQ=255)

                            tAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATcc                                                                        >  2:869887/1‑100 (MQ=255)

                              tggcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtag‑GTCGGATGCACCGCGAAGGCGGCTTATCCGAc                                                                     >  2:2603663‑M1/69‑100 (MQ=255)

                               ggcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtag‑GTCGGATGCACCGCGAAGGCGGCTTATCCGAcc                                                                    >  1:463490‑M1/68‑100 (MQ=255)

                               aaGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGAc                                                                     <  1:1475713/100‑1 (MQ=255)

                                aGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGAcc                                                                    <  1:1977003/100‑1 (MQ=255)

                                aGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGAcc                                                                    <  1:169675/100‑1 (MQ=255)

                                 gTCCCGTCAGGACCAGATTTTCAACGAATCCTCCCGACAGAAAATCACCTTCGGACTGGAGGTAGTGTACGATACACCGCGAAGGCGGCTTATcc                                                                        >  2:2736486/1‑95 (MQ=255)

                                  actgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtag‑GTCGGATGCACCGCGAAGGCGGCTTATCCGACCTAc                                                                 >  2:750089‑M1/65‑100 (MQ=255)

                                   nccGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTAc                                                                 >  2:251076/2‑100 (MQ=255)

                                    ccGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACg                                                                >  1:1096764/1‑100 (MQ=255)

                                    ccGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACg                                                                >  2:794670/1‑100 (MQ=255)

                                       tCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGtt                                                              <  2:2421326/99‑1 (MQ=255)

                                        gatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCt                                                            >  1:471522‑M1/59‑100 (MQ=255)

                                        ctggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCt                                                            <  2:1821091/98‑1 (MQ=255)

                                        cAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCt                                                            <  1:634717/100‑1 (MQ=255)

                                         atggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCtt                                                           >  1:1185879‑M1/58‑100 (MQ=255)

                                          ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCtag                                                          >  1:1821098/1‑98 (MQ=255)

                                          ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                          <  1:158737/100‑1 (MQ=255)

                                          ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                          <  1:1121634/100‑1 (MQ=255)

                                           gACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTtat                                                         <  1:1782462/100‑1 (MQ=255)

                                             tactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTatat                                                       >  1:1103342‑M1/54‑100 (MQ=255)

                                             ccGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTatat                                                       >  2:1301473/1‑100 (MQ=255)

                                             ccGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTatat                                                       >  1:92354/1‑100 (MQ=255)

                                             ccGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTatat                                                       >  1:394270/1‑100 (MQ=255)

                                              cGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATg                                                      >  1:961060/1‑100 (MQ=255)

                                               ggATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGc                                                     >  2:746322/1‑100 (MQ=255)

                                               ggATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGGTCTTATATGc                                                     >  2:1072391/1‑100 (MQ=255)

                                                gATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGcc                                                    <  2:2312227/100‑1 (MQ=255)

                                                  ttttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCa                                                  >  1:1144736/1‑100 (MQ=255)

                                                    ttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgg                                                >  1:1220635/1‑100 (MQ=255)

                                                    ttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgg                                                >  1:722881/1‑100 (MQ=255)

                                                      cAACGGATTCTCACGACAGAACATTCTCTTCGGACTGGGGGTAGTTTCGGATGCACCGCGGAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                              <  2:1644008/100‑1 (MQ=255)

                                                      cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                              <  2:1168179/100‑1 (MQ=255)

                                                      cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                              <  1:206400/100‑1 (MQ=255)

                                                               ctcACGACAGAAAATTCTCTTCGGACTGGGTGTAGTGTCGGATGCACCGGGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATcc                                        <  2:2543670/97‑1 (MQ=255)

                                                               ctcACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCcac                                     <  2:2465563/100‑1 (MQ=255)

                                                                 tccaaCAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACaa                                   <  2:822600/96‑1 (MQ=255)

                                                                 cACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACaa                                   >  1:2227003/1‑100 (MQ=255)

                                                                  aCGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAAt                                  >  1:1788619/1‑100 (MQ=255)

                                                                    gACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATcc                                <  1:1220735/100‑1 (MQ=255)

                                                                    gACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATcc                                <  2:1504972/100‑1 (MQ=255)

                                                                      cAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCtt                              <  1:285603/100‑1 (MQ=255)

                                                                      cAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCtt                              <  1:251076/100‑1 (MQ=255)

                                                                       aGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTa                             <  1:344821/100‑1 (MQ=255)

                                                                       aGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTa                             >  2:1254519/1‑100 (MQ=255)

                                                                       aGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTa                             <  2:2261367/100‑1 (MQ=255)

                                                                       aGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTa                             <  1:2295602/100‑1 (MQ=255)

                                                                        gAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTaa                            <  1:2025650/100‑1 (MQ=255)

                                                                        gAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTaa                            >  2:30967/1‑100 (MQ=255)

                                                                         aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                           <  1:1114045/100‑1 (MQ=255)

                                                                         aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                           <  1:2529883/100‑1 (MQ=255)

                                                                            aTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCa                        <  2:1884957/100‑1 (MQ=255)

                                                                                 ctTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCa                   >  1:393022/1‑100 (MQ=255)

                                                                                  ttCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAg                  >  2:1469080/1‑100 (MQ=255)

                                                                                    cGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTa                <  1:2499208/100‑1 (MQ=255)

                                                                                     ggACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTAc               >  2:833250/1‑100 (MQ=255)

                                                                                      gACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTAcc              <  2:1590631/100‑1 (MQ=255)

                                                                                      gACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGATTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCACACAATCCTTAACTCAACGCAGTAcc              >  2:947020/1‑100 (MQ=255)

                                                                                         tGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATc           <  2:393021/100‑1 (MQ=255)

                                                                                          gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa          >  1:137869/1‑100 (MQ=255)

                                                                                          gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa          >  2:2118194/1‑100 (MQ=255)

                                                                                          gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa          >  1:287387/1‑100 (MQ=255)

                                                                                          gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa          >  1:982342/1‑100 (MQ=255)

                                                                                           ggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCaa         <  2:1119441/100‑1 (MQ=255)

                                                                                           ggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa          >  2:1704896/1‑99 (MQ=255)

                                                                                            gtgtagTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAAc        >  2:1041497‑M1/7‑100 (MQ=255)

                                                                                                agTGTCGGATGCTCGGCGAAGGCGGCTTATCCGACCTACGTTCTTACATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTg    >  2:244541‑M1/3‑100 (MQ=255)

                                                                                                agTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTg    >  2:317254‑M1/3‑100 (MQ=255)

                                                                                                agTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTg    >  2:1387450‑M1/3‑100 (MQ=255)

                                                                                                agTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTg    >  2:830211‑M1/3‑100 (MQ=255)

                                                                                                agTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTg    >  1:723367‑M1/3‑100 (MQ=255)

                                                                                                 gTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGc   >  1:2674442‑M1/2‑100 (MQ=255)

GTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCC  >  NC_000913/2393032‑2393229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.