| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16653 | NA (NA) | 12 (0.130) | 8/164 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
CTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCT > NC_000913/16554‑16749 | atttgattggtcgcccgcagccattagctgattaacaggcgtaaaaaaaccggggtattatcccataagcgataacttaagggttgaaacatcTgaagaa < 2:2468307‑M1/7‑1 (MQ=255)atttgattggtcgcccgcagccattagctgattaacaggcgtaaaaaaaccggggaattatcccataagcgctaacttaagggttgaaccatcTgaagaa < 1:858563‑M1/7‑1 (MQ=255)atttgattggtcgcccgcagccattagctgattaacaggcgtaaaaaaaccggggaattatcccataagcgctaacttaagggttgaaccatcTgaagaa < 1:2382917‑M1/7‑1 (MQ=255) aaaaaaccggggaattatcccataagcgctaacttaagggttgaaccatcTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCAttctt > 1:892617‑M1/51‑100 (MQ=255) cggggattactcccataagcgctaacttaagggttgaaccatcTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGAt > 2:2137688‑M1/44‑98 (MQ=255) cggggagtgatcccataagcgctaacttaagggttgaaccatcTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATgg > 1:490194‑M1/44‑100 (MQ=255) ggggagtgatcccataagcgctaacttaagggttgaaccatcTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGt > 1:2373363‑M1/43‑100 (MQ=255) tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATc > 2:2419874/1‑100 (MQ=11) tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATc < 1:1845622/100‑1 (MQ=11) tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATc < 2:164827/100‑1 (MQ=11) cAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCAc > 1:1225149/1‑100 (MQ=32) aaCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTcc > 1:886752/1‑100 (MQ=35) aCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTccc < 1:2580317/100‑1 (MQ=38) gCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCccg < 1:2169678/100‑1 (MQ=38) cAATTGAAGAACGCGAGGCATTGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCccgc > 2:1583039/1‑100 (MQ=255) cAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTGTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCccg > 1:231958/1‑99 (MQ=38) cAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCGTCAGATGGTGCAACCATTAAGTTAGCGCTTATGGGATCACTCCccgc > 2:1858511/1‑100 (MQ=255) aaTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCccgcc < 2:1608640/100‑1 (MQ=40) aaTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCccgc < 1:22047/99‑1 (MQ=38) ttGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGt < 2:2384507/100‑1 (MQ=255) GAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGTGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg < 2:2386890‑M1/100‑1 (MQ=255) GAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg < 2:2020122‑M1/100‑1 (MQ=255) GAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg < 1:1201680‑M1/100‑1 (MQ=255) GAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg < 1:1734917‑M1/100‑1 (MQ=255) GAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg < 1:2515019‑M1/100‑1 (MQ=255) AAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGc > 2:2143200‑M1/1‑100 (MQ=255) AAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGc > 1:1515273‑M1/1‑100 (MQ=255) AAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGc > 1:222149‑M1/1‑100 (MQ=255) AGAGCGCGGGGCATCGTCTGAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTCCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGct > 2:124722‑M1/1‑100 (MQ=255) AGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGct < 2:2318377‑M1/100‑1 (MQ=255) AGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGct < 1:2729610‑M1/100‑1 (MQ=255) AGAACGAGAGGCATCGTCTTAACGAGGCACCGAGGCGTGGCATTCTTCAGATGGTTCAACCCGTAAGTTAGCGCGTAGGGGATCACTCCccgccg < 2:226257‑M1/95‑1 (MQ=255) | CTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCT > NC_000913/16554‑16749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |