New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 16653	NA (NA)	12 (0.130)	8/164	NT	NA	noncoding (1267/1345 nt)	IS186	repeat region
	?	NC_000913	= 16691	NA (NA)					noncoding (1305/1345 nt)	IS186	repeat region

ACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGT  >  NC_000913/16597‑16789                                                                                               |                                                                                                   aaaaaaccggggaattatcccataagcgctaacttaagggttgaaccatcTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCAttctt                                                                                               >  1:892617‑M1/51‑100 (MQ=255)        cggggattactcccataagcgctaacttaagggttgaaccatcTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGAt                                                                                          >  2:2137688‑M1/44‑98 (MQ=255)        cggggagtgatcccataagcgctaacttaagggttgaaccatcTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATgg                                                                                        >  1:490194‑M1/44‑100 (MQ=255)         ggggagtgatcccataagcgctaacttaagggttgaaccatcTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGt                                                                                       >  1:2373363‑M1/43‑100 (MQ=255)                                      tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATc                                                          <  1:1845622/100‑1 (MQ=11)                                      tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATc                                                          >  2:2419874/1‑100 (MQ=11)                                      tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATc                                                          <  2:164827/100‑1 (MQ=11)                                        cAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCAc                                                        >  1:1225149/1‑100 (MQ=32)                                           aaCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTcc                                                     >  1:886752/1‑100 (MQ=35)                                            aCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTccc                                                    <  1:2580317/100‑1 (MQ=38)                                              gCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCccg                                                  <  1:2169678/100‑1 (MQ=38)                                               cAATTGAAGAACGCGAGGCATTGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCccgc                                                 >  2:1583039/1‑100 (MQ=255)                                               cAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTGTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCccg                                                  >  1:231958/1‑99 (MQ=38)                                               cAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCGTCAGATGGTGCAACCATTAAGTTAGCGCTTATGGGATCACTCCccgc                                                 >  2:1858511/1‑100 (MQ=255)                                                aaTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCccgcc                                                <  2:1608640/100‑1 (MQ=40)                                                aaTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCccgc                                                 <  1:22047/99‑1 (MQ=38)                                                  ttGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGt                                              <  2:2384507/100‑1 (MQ=255)                                                  cttccgatctcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGt                                              <  1:211286/90‑1 (MQ=255)                                                    GAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGTGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg                                            <  2:2386890‑M1/100‑1 (MQ=255)                                                    GAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg                                            <  1:1734917‑M1/100‑1 (MQ=255)                                                    GAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg                                            <  2:2020122‑M1/100‑1 (MQ=255)                                                    GAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg                                            <  1:1201680‑M1/100‑1 (MQ=255)                                                    GAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg                                            <  1:2515019‑M1/100‑1 (MQ=255)                                                     AAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGc                                           >  1:222149‑M1/1‑100 (MQ=255)                                                     AAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGc                                           >  1:1515273‑M1/1‑100 (MQ=255)                                                     AAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGc                                           >  2:2143200‑M1/1‑100 (MQ=255)                                                      AGAGCGCGGGGCATCGTCTGAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTCCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGct                                          >  2:124722‑M1/1‑100 (MQ=255)                                                      AGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGct                                          <  1:2729610‑M1/100‑1 (MQ=255)                                                      AGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGct                                          <  2:2318377‑M1/100‑1 (MQ=255)                                                      AGAACGAGAGGCATCGTCTTAACGAGGCACCGAGGCGTGGCATTCTTCAGATGGTTCAACCCGTAAGTTAGCGCGTAGGGGATCACTCCccgccg                                               <  2:226257‑M1/95‑1 (MQ=255)                                                            cgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGtagatcggaag                                    >  2:211286/1‑90 (MQ=255)                                                            cgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACt                                    <  2:2176518/100‑1 (MQ=255)                                                            cgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACt                                    >  1:2403567/1‑100 (MQ=255)                                                             gAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTc                                   >  1:186489/1‑100 (MQ=255)                                                              aGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCg                                  <  1:783839/100‑1 (MQ=255)                                                              aGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCg                                  <  1:2400541/100‑1 (MQ=255)                                                               ggCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCgg                                 <  1:207951/100‑1 (MQ=255)                                                                  aTCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGCTCACTCCCCGCCGTTGCTCTTACTc                                   >  2:2363486/1‑95 (MQ=255)                                                                  aTCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGAtt                              <  2:1488784/100‑1 (MQ=255)                                                                    cGTCTCAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCg                            <  1:2346403/100‑1 (MQ=255)                                                                    atctttAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTcn                            <  2:836871/96‑2 (MQ=255)                                                                     gTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGt                           <  1:8992/100‑1 (MQ=255)                                                                      tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGt                           >  1:911475/1‑99 (MQ=255)                                                                      tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTa                          <  1:2464674/100‑1 (MQ=255)                                                                       cTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTaa                         <  1:764518/100‑1 (MQ=255)                                                                        ttAACGAGGCACCGAGGTGTCGCATTCTTCAGATGTTTCAACCCTTAAGTTAGCGCTTATGTGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAg                        <  2:570324/100‑1 (MQ=255)                                                                        ttAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAg                        <  1:1008518/100‑1 (MQ=255)                                                                        ttAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAg                        <  2:328403/100‑1 (MQ=255)                                                                        ntAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTATTACTCGGATTCgag                          >  1:836875/2‑96 (MQ=255)                                                                          aaCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGcc                      >  1:1660612/1‑100 (MQ=255)                                                                          aaCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGcc                      <  1:499875/100‑1 (MQ=255)                                                                           aCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATTACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCg                     <  2:1467205/100‑1 (MQ=255)                                                                           aCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCg                     >  1:1580740/1‑100 (MQ=255)                                                                            cGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGt                    >  2:1258253/1‑100 (MQ=255)                                                                            cGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGt                    >  2:1819039/1‑100 (MQ=255)                                                                             gAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTg                   <  1:2143786/100‑1 (MQ=255)                                                                             gAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTg                   >  2:1186682/1‑100 (MQ=255)                                                                              aGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGa                  >  1:271259/1‑100 (MQ=255)                                                                              aGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGa                  <  2:1196438/100‑1 (MQ=255)                                                                               ggCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGaa                 >  1:1173676/1‑100 (MQ=255)                                                                               ggCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGaa                 >  2:200592/1‑100 (MQ=255)                                                                                  aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAAc              <  2:1514229/100‑1 (MQ=255)                                                                                  aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAAc              <  2:1225144/100‑1 (MQ=255)                                                                                  aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAAc              <  2:959775/100‑1 (MQ=255)                                                                                   ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACa             <  1:2070956/100‑1 (MQ=255)                                                                                   ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACa             <  2:631507/100‑1 (MQ=255)                                                                                    cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAg            <  2:2091346/100‑1 (MQ=255)                                                                                    cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAg            <  1:2318392/100‑1 (MQ=255)                                                                                         cGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAAcc       <  1:2514789/100‑1 (MQ=255)                                                                                          gTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCt      >  1:2366458/1‑100 (MQ=255)                                                                                            cGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTcc    >  1:1904043/1‑100 (MQ=255)                                                                                              cATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGt  >  2:1915169/1‑100 (MQ=255)                                                                                               |                                                                                                   ACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGT  >  NC_000913/16597‑16789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.