New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4035360	NA (NA)	11 (0.120)	4/166	NT	100%	intergenic (+207/‑171)	hemG/rrsA	protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
	?	NC_000913	= 4035384	0 (0.000)					intergenic (+231/‑147)	hemG/rrsA	protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon

GTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAA  >  NC_000913/4035281‑4035459                                                                                |                                                                                                    gTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAG                                                                                 <  1:1753009‑M2/100‑1 (MQ=255) gTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAG                                                                                 <  2:1871398‑M2/100‑1 (MQ=255) gTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAG                                                                                 >  1:647923‑M2/1‑100 (MQ=255)  ttCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAATGCGAAGC                                                                                >  1:1443791‑M2/1‑100 (MQ=255)  ttCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGC                                                                                >  1:2225103‑M2/1‑100 (MQ=255)   tctcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGACGGCGCATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCG                                                                               <  2:1759983‑M2/100‑1 (MQ=255)   tctcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCG                                                                               <  2:388370‑M2/100‑1 (MQ=255)    ctcCTGCGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGG                                                                              >  1:1922573‑M2/1‑100 (MQ=255)    ctcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATACTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGAGCCGCTGAGAAAAAGCGAAGCGG                                                                              <  2:733876‑M2/100‑1 (MQ=255)     tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                             >  1:423529‑M2/1‑100 (MQ=255)     tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                             <  2:357993‑M2/100‑1 (MQ=255)     tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                             <  2:1940218‑M2/100‑1 (MQ=255)     tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                             >  1:898812‑M2/1‑100 (MQ=255)     tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                             <  1:1052234‑M2/100‑1 (MQ=255)     tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                             <  1:2403288‑M2/100‑1 (MQ=255)     tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                             >  1:1952705‑M2/1‑100 (MQ=255)      ccTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCG                                                                               >  1:227439‑M2/1‑97 (MQ=255)                                                                 attatGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctct                 <  1:1331255‑M2/100‑61 (MQ=255)                                                                      cttccgatctcgccgctgagaaaaagCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccgg            >  2:1453732‑M2/11‑35 (MQ=255)                                                                       cacaCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccgga           <  1:1489412‑M2/100‑67 (MQ=255)                                                                         cacCCCGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagaggcaagcatttatttttgctttctctgccggagt         <  2:2247250‑M2/100‑69 (MQ=255)                                                                           ccccGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttc       <  2:1285121‑M2/100‑71 (MQ=255)                                                                           ccccGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttc       <  1:937569‑M2/100‑71 (MQ=255)                                                                                cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg  <  1:1785600‑M2/100‑76 (MQ=255)                                                                                cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagatcggaag  <  1:1453738‑M2/100‑76 (MQ=255)                                                                                cgccgcTGAGAAAAAGCGAAGCAGCgcggggtgtgcataatacgccttcccgctacagaggcaagcatttatttttgctttctctgccggagttctcagg  <  2:1597375‑M2/100‑76 (MQ=255)                                                                                cgccgcTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg  <  1:1895773‑M2/100‑76 (MQ=255)                                                                                |                                                                                                    GTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAA  >  NC_000913/4035281‑4035459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.