New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4035360NA (NA)11 (0.120) 4/166 NT 100% intergenic (+207/‑171) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
?NC_000913 = 4035384 0 (0.000)intergenic (+231/‑147) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon

TCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  >  NC_000913/4035285‑4035483
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tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     <  1:1052234‑M2/100‑1 (MQ=255)
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     <  2:1940218‑M2/100‑1 (MQ=255)
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     >  1:898812‑M2/1‑100 (MQ=255)
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     >  1:423529‑M2/1‑100 (MQ=255)
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     >  1:1952705‑M2/1‑100 (MQ=255)
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     <  2:357993‑M2/100‑1 (MQ=255)
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     <  1:2403288‑M2/100‑1 (MQ=255)
                                                            attatGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctct                                         <  1:1331255‑M2/100‑61 (MQ=255)
                                                                 cttccgatctcgccgctgagaaaaagCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccgg                                    >  2:1453732‑M2/11‑35 (MQ=255)
                                                                  cacaCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccgga                                   <  1:1489412‑M2/100‑67 (MQ=255)
                                                                    cacCCCGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagaggcaagcatttatttttgctttctctgccggagt                                 <  2:2247250‑M2/100‑69 (MQ=255)
                                                                      ccccGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttc                               <  2:1285121‑M2/100‑71 (MQ=255)
                                                                      ccccGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttc                               <  1:937569‑M2/100‑71 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                          <  1:1785600‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagatcggaag                          <  1:1453738‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCAGCgcggggtgtgcataatacgccttcccgctacagaggcaagcatttatttttgctttctctgccggagttctcagg                          <  2:1597375‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                          <  1:1895773‑M2/100‑76 (MQ=255)
                                                                              cgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggcga                       <  2:1003129‑M2/100‑79 (MQ=255)
                                                                                              agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttttttttttttccggagttatcaggagaaccccgctgacccgg        <  2:1220221‑M2/99‑94 (MQ=255)
                                                                                              agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggc       <  2:1239000‑M2/100‑95 (MQ=255)
                                                                                               gcggcgcggggtgtgcataatacgccttcccgctacagagtcaagcattgatttttgctttctctgccggagttctcaggagaaccccgctgaccc          >  2:1522880‑M2/1‑5 (MQ=255)
                                                                                                cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcgg     >  1:62343‑M2/1‑4 (MQ=255)
                                                                                                cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcgg     >  1:904203‑M2/1‑4 (MQ=255)
                                                                                                cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcgg     <  2:1706724‑M2/100‑97 (MQ=255)
                                                                                                 ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggc    <  1:2286628‑M2/100‑98 (MQ=255)
                                                                                                 ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggc    <  1:1757660‑M2/100‑98 (MQ=255)
                                                                                                 ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagatctcaggagaaccccgctgacccggcggc    <  1:1157417‑M2/100‑98 (MQ=255)
                                                                                                  gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcg   >  1:2222622‑M2/1‑2 (MQ=255)
                                                                                                   cgcggggtgtgcataatatgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgn  >  2:711293‑M2/1‑1 (MQ=255)
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TCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  >  NC_000913/4035285‑4035483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.