New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 66780NA (NA)5 (0.050) 4/172 NT NA noncoding (216/248 nt) REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 66812 NA (NA)noncoding (248/248 nt) REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 131 total aligned reads displayed.

ATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTC  >  NC_000913/66682‑66879
                                                                                                  |                                                                                                   
aTCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGGTTATCCGGCCTACAAAATCGAAGCGTGTAGg                                                                                                    >  2:2609872‑M1/1‑99 (MQ=255)
aTCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGg                                                                                                    >  2:32895‑M1/1‑99 (MQ=255)
 tCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGgc                                                                                                   >  2:2311609‑M1/1‑98 (MQ=255)
   gCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCa                                                                                                 >  1:1456644/1‑100 (MQ=40)
   gCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCa                                                                                                 <  1:849537/100‑1 (MQ=38)
          gTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGa                                                                                          >  1:2656104/1‑100 (MQ=38)
             ggCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGAcgc                                                                                       >  2:1029104/1‑100 (MQ=38)
             ggCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGAcgc                                                                                       >  1:256168/1‑100 (MQ=38)
              gCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGAcgcg                                                                                      >  2:1720224/1‑100 (MQ=38)
              gCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGAcgcg                                                                                      <  2:2230989/100‑1 (MQ=38)
               ccTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGAcgc                                                                                       >  2:437660/1‑98 (MQ=35)
                 tGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCa                                                                                   >  2:1711737/1‑100 (MQ=255)
                   aTAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGc                                                                                 <  1:2250353/100‑1 (MQ=255)
                    tAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCg                                                                                <  1:726398/100‑1 (MQ=40)
                     aaGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCg                                                                                >  1:153158/1‑99 (MQ=40)
                      aGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTc                                                                              >  1:1207406/1‑100 (MQ=255)
                      aGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTc                                                                              >  2:1873534/1‑100 (MQ=255)
                       gACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCg                                                                             >  2:1764689/1‑100 (MQ=255)
                       gACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCg                                                                             >  1:1866065/1‑100 (MQ=255)
                        aCGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGc                                                                            <  1:1326486/100‑1 (MQ=255)
                        aCGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGc                                                                            <  1:2524401/100‑1 (MQ=255)
                         cgcgCCAGCGTCGTATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCa                                                                           >  1:1849197/1‑100 (MQ=255)
                         cgcgCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCa                                                                           >  1:112809/1‑100 (MQ=255)
                         cgcgCCAGCGTCGCATCAGGCGTTGAATGCCGGATACGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCa                                                                           <  1:666190/100‑1 (MQ=255)
                          gcgcCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCAt                                                                          <  2:2651510/100‑1 (MQ=40)
                           cgcCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTACgcctgatgcgacgctggcgcgtcttatc                                                                         <  1:463131‑M1/100‑29 (MQ=255)
                            gcCTGCGTCGCATCAGGCGTTGAGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCa                                                                           <  2:1661805/97‑1 (MQ=255)
                            gcCAGCGTCGCATCAGGCGTTGAATGCCGGATCCGCTTTTCTCATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCa                                                                        <  2:1931737/100‑1 (MQ=255)
                                gCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATTGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCg                                                                    <  1:261181/100‑1 (MQ=255)
                                gCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGgcctgatgcgacgctgacgcgtcttatctggcc                                                                    <  1:1172129‑M1/100‑34 (MQ=255)
                                gCGTCGCACCTGGCCTTGAAGGCGGGATGCCCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGgcctgatgcgacgctgacgcgtcttatctggc                                                                     <  2:1404701‑M1/99‑33 (MQ=255)
                                 cttCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGt                                                                   >  1:1868899/3‑100 (MQ=255)
                                 cGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGgcctgatgcgacgctgacgcgtcttatctggcct                                                                   <  1:485476‑M1/100‑35 (MQ=255)
                                 cGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGt                                                                   <  2:1622355/100‑1 (MQ=255)
                                   tCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTa                                                                 <  2:67767/100‑1 (MQ=255)
                                   tCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTa                                                                 <  2:256168/100‑1 (MQ=255)
                                   tCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTa                                                                 <  2:1758029/100‑1 (MQ=255)
                                    cGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGgcctgatgcgacgctgacgcgtcttatctggcctaca                                                                <  1:988310‑M1/100‑38 (MQ=255)
                                    cGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGtt                                                                  <  2:1171338/98‑1 (MQ=255)
                                    cGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTAc                                                                <  1:268415/100‑1 (MQ=255)
                                    cGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTAc                                                                <  1:974991/100‑1 (MQ=255)
                                      cATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACAt                                                              >  1:291524/1‑100 (MQ=255)
                                       aTCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATa                                                             >  1:2006904/1‑100 (MQ=255)
                                        tCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATAc                                                            >  2:24645/1‑100 (MQ=255)
                                          aGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCg                                                          >  2:1659342/1‑100 (MQ=255)
                                             cGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGAt                                                       >  1:1055991/1‑100 (MQ=255)
                                              gTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATg                                                      <  1:554633/100‑1 (MQ=255)
                                               ttGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCTGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGc                                                     <  2:1759081/100‑1 (MQ=255)
                                               ttGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGc                                                     <  2:1944001/100‑1 (MQ=255)
                                                tGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCg                                                    >  1:976461/1‑100 (MQ=255)
                                                  cgatctggATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGc                                                  <  2:306482/94‑1 (MQ=255)
                                                  aaTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGc                                                  <  1:1764696/100‑1 (MQ=255)
                                                  aaTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGc                                                  <  2:1251805/100‑1 (MQ=255)
                                                  aaTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGc                                                  <  1:1987116/100‑1 (MQ=255)
                                                   aTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCt                                                 <  1:1664156/100‑1 (MQ=255)
                                                    tGCCGGATGGGCGTGGATTATCCGGCCTACAAAATCGCAGCGTGTAGGCCGGATAAGACGCGCAAGCGTCGCGTCAGGCGTGACATACGGGATgggg                                                   >  2:2405412/1‑97 (MQ=11)
                                                     gCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGc                                                  <  2:2166317/97‑1 (MQ=255)
                                                        ggATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGcagatcg                                            >  1:306482/1‑94 (MQ=255)
                                                           tGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGcg                                         <  1:782817/100‑1 (MQ=255)
                                                            gcgcTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGcga                                        <  1:142122/100‑1 (MQ=255)
                                                             cgcTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGcgac                                       <  2:1871117/100‑1 (MQ=255)
                                                             cgcTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGcgac                                       >  1:2468013/1‑100 (MQ=255)
                                                                  tGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAc                                  >  2:2323900/1‑100 (MQ=255)
                                                                   gCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAcc                                 <  1:2166557/100‑1 (MQ=255)
                                                                    cTTATCCGGTCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAccc                                >  2:1065557/1‑100 (MQ=255)
                                                                    cTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAccc                                >  2:1379024/1‑100 (MQ=255)
                                                                    cTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAccc                                >  1:2689374/1‑100 (MQ=255)
                                                                    cTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAccc                                <  1:261630/100‑1 (MQ=255)
                                                                    cTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAccc                                >  1:2459062/1‑100 (MQ=255)
                                                                    cTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAccc                                <  1:1873542/100‑1 (MQ=255)
                                                                     ttATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCg                               >  2:544565/1‑100 (MQ=255)
                                                                     ttATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCg                               >  2:2122973/1‑100 (MQ=255)
                                                                     ttATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCg                               <  2:1994192/100‑1 (MQ=255)
                                                                      tATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGt                              <  2:1506932/100‑1 (MQ=255)
                                                                       aTCCGGCCTACAAAATCGCAGCGTGTGGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGt                              <  1:584664/99‑1 (MQ=255)
                                                                       aTCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTa                             <  2:1508291/100‑1 (MQ=255)
                                                                        tCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTaa                            >  1:36879/1‑100 (MQ=255)
                                                                        tCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTaa                            >  2:1849692/1‑100 (MQ=255)
                                                                          cGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATa                          >  2:1854229/1‑100 (MQ=255)
                                                                             ccTACAAAATCGCATCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATacac                       <  1:1453706/100‑1 (MQ=255)
                                                                             ccTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATacac                       <  2:2432809/100‑1 (MQ=255)
                                                                             ccTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATacac                       >  2:315556/1‑100 (MQ=255)
                                                                             ccTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATacac                       <  2:664234/100‑1 (MQ=255)
                                                                              cTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACt                      >  2:1915186/1‑100 (MQ=255)
                                                                              cTACAAAATCACAGCGTGTAGGCCAGATACGACGCGTCAGCGTCGCACCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACt                      >  2:1530689/1‑100 (MQ=255)
                                                                                aCAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTc                    <  2:632955/100‑1 (MQ=255)
                                                                                aCAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTc                    >  1:386092/1‑100 (MQ=255)
                                                                                 cAAAATCGCAGCGTGTGGGCCAGATCAGACGCGTCAGCGCCGCATCCGGCGTGCCATCCCGGCTGCGGCTACTGAGCGCCGAAACCCGTAATACACTTCg                   >  2:225716/1‑100 (MQ=21)
                                                                                 cAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCg                   >  1:370064/1‑100 (MQ=255)
                                                                                 cAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCg                   >  1:311569/1‑100 (MQ=255)
                                                                                  aaaaTCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGt                  <  1:2274802/100‑1 (MQ=255)
                                                                                     aTCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTcc               <  1:24645/100‑1 (MQ=255)
                                                                                      tCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCca              <  2:1303469/100‑1 (MQ=255)
                                                                                        gCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCcagc            <  1:678226/100‑1 (MQ=255)
                                                                                              tgtAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCcagcgcagcg      <  1:1008553/100‑1 (MQ=255)
                                                                                                tAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGcgcg    <  2:46989/100‑1 (MQ=255)
                                                                                                tAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGcgcg    <  1:1948284/100‑1 (MQ=255)
                                                                                                 aGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattcaacgcctgatgcgacg   <  1:485476‑M2/100‑67 (MQ=255)
                                                                                                  ggCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTc  >  1:117657/1‑100 (MQ=255)
                                                                                                  ggCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACACGTAATACACTTCGTTCCAGCGCAGCGCGTc  >  2:156732/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
ATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTC  >  NC_000913/66682‑66879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.