New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 66780NA (NA)5 (0.050) 4/172 NT NA noncoding (216/248 nt) REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 66812 NA (NA)noncoding (248/248 nt) REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 139 total aligned reads displayed.

GCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTATCAA  >  NC_000913/66714‑66911
                                                                                                  |                                                                                                   
gCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATTGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCg                                                                                                    <  1:261181/100‑1 (MQ=255)
 cttCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGt                                                                                                   >  1:1868899/3‑100 (MQ=255)
 cGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGt                                                                                                   <  2:1622355/100‑1 (MQ=255)
   tCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTa                                                                                                 <  2:67767/100‑1 (MQ=255)
   tCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTa                                                                                                 <  2:1758029/100‑1 (MQ=255)
    cGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGtt                                                                                                  <  2:1171338/98‑1 (MQ=255)
    cGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTAc                                                                                                <  1:268415/100‑1 (MQ=255)
    cGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTAc                                                                                                <  1:974991/100‑1 (MQ=255)
      cATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACAt                                                                                              >  1:291524/1‑100 (MQ=255)
        tCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATAc                                                                                            >  2:24645/1‑100 (MQ=255)
          aGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCg                                                                                          >  2:1659342/1‑100 (MQ=255)
           ggCGTTCAATGCCGGATGCGCTCTGCTTATACGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCgg                                                                                         <  2:1875369/100‑1 (MQ=255)
             cGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGAt                                                                                       >  1:1055991/1‑100 (MQ=255)
              gTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATg                                                                                      <  1:554633/100‑1 (MQ=255)
               ttGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCTGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGc                                                                                     <  2:1759081/100‑1 (MQ=255)
               ttGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGc                                                                                     <  2:1944001/100‑1 (MQ=255)
                ttaaTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGAt                                                                                       <  2:61120/95‑1 (MQ=255)
                  cgatctggATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGc                                                                                  <  2:306482/94‑1 (MQ=255)
                  aaTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGc                                                                                  <  1:1987116/100‑1 (MQ=255)
                  aaTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGc                                                                                  <  2:1251805/100‑1 (MQ=255)
                   aTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCt                                                                                 >  1:1826794/1‑100 (MQ=255)
                   aTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCt                                                                                 <  1:1664156/100‑1 (MQ=255)
                    tGCCGGATGGGCGTGGATTATCCGGCCTACAAAATCGCAGCGTGTAGGCCGGATAAGACGCGCAAGCGTCGCGTCAGGCGTGACATACGGGATgggg                                                                                   >  2:2405412/1‑97 (MQ=11)
                     gCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGc                                                                                  <  2:2166317/97‑1 (MQ=255)
                        ggATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGcagatcg                                                                            >  1:306482/1‑94 (MQ=255)
                           tGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGcg                                                                         <  1:782817/100‑1 (MQ=255)
                            gcgcTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGcga                                                                        <  1:142122/100‑1 (MQ=255)
                             cgcTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGcgac                                                                       <  1:545391/100‑1 (MQ=255)
                             cgcTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGcgac                                                                       >  1:2468013/1‑100 (MQ=255)
                             cgcTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGcgac                                                                       <  2:1871117/100‑1 (MQ=255)
                             cgcTTTGCTTATCCGGCCTACAAAATCGCAGCGAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCGACTTAGcgac                                                                       >  2:1806746/1‑100 (MQ=255)
                                  tGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAc                                                                  >  2:1975311/1‑100 (MQ=255)
                                   gCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAcc                                                                 >  2:2322546/1‑100 (MQ=255)
                                    cTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAccc                                                                >  1:2689374/1‑100 (MQ=255)
                                    cTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAAccc                                                                >  2:1379024/1‑100 (MQ=255)
                                     ttATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCg                                                               >  2:544565/1‑100 (MQ=255)
                                     ttATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCg                                                               >  2:2122973/1‑100 (MQ=255)
                                     ttATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCg                                                               <  2:1994192/100‑1 (MQ=255)
                                      tATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGt                                                              <  2:1506932/100‑1 (MQ=255)
                                       aTCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTa                                                             <  2:1508291/100‑1 (MQ=255)
                                        tCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTaa                                                            >  1:36879/1‑100 (MQ=255)
                                        tCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTaa                                                            >  2:1849692/1‑100 (MQ=255)
                                        tCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTaa                                                            <  1:2402607/100‑1 (MQ=255)
                                           ggCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATac                                                         >  1:722532/1‑100 (MQ=255)
                                             ccTACAAAATCGCATCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATacac                                                       <  1:1453706/100‑1 (MQ=255)
                                             ccTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATacac                                                       <  2:664234/100‑1 (MQ=255)
                                              cTACAAAATCACAGCGTGTAGGCCAGATACGACGCGTCAGCGTCGCACCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACt                                                      >  2:1530689/1‑100 (MQ=255)
                                               tACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACtt                                                     <  2:1563160/100‑1 (MQ=255)
                                                 cAAAATCGCAGCGTGTGGGCCAGATCAGACGCGTCAGCGCCGCATCCGGCGTGCCATCCCGGCTGCGGCTACTGAGCGCCGAAACCCGTAATACACTTCg                                                   >  2:225716/1‑100 (MQ=21)
                                                 cAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCg                                                   >  1:370064/1‑100 (MQ=255)
                                                 cAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCg                                                   >  1:311569/1‑100 (MQ=255)
                                                  aaaaTCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGt                                                  <  1:2274802/100‑1 (MQ=255)
                                                   aaaTCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATACGGCTACTTAGCGACGAAACCCGTAATACACTTCGtt                                                 <  2:1462993/100‑1 (MQ=255)
                                                     aTCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTcc                                               <  1:934326/100‑1 (MQ=255)
                                                     aTCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTcc                                               <  1:1886981/100‑1 (MQ=255)
                                                     aTCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTcc                                               <  1:24645/100‑1 (MQ=255)
                                                        gCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCcagc                                            <  1:678226/100‑1 (MQ=255)
                                                          aGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCcagcgc                                          <  2:1213583/100‑1 (MQ=255)
                                                              tgtAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattcaacgcctgatgcg                                      <  1:988310‑M2/100‑64 (MQ=255)
                                                              tgtAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCcagcgcagcg                                      <  1:1008553/100‑1 (MQ=255)
                                                                tAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGcgcg                                    <  2:46989/100‑1 (MQ=255)
                                                                tAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGcgcg                                    <  1:1948284/100‑1 (MQ=255)
                                                                 aGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattcaacgcctgatgcgacg                                   <  1:485476‑M2/100‑67 (MQ=255)
                                                                  ggCCAGATAAGACGCGTCAGCGTCGCATCAGGCctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattcaacgcctgatgcgacgc                                  <  1:1172129‑M2/100‑68 (MQ=255)
                                                                  ggCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTc                                  >  1:117657/1‑100 (MQ=255)
                                                                    ccAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCtt                                >  2:2599371/1‑100 (MQ=255)
                                                                    ccAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGGCtt                                >  2:2476192/1‑100 (MQ=255)
                                                                     cAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCCGCGCAGCGCGTCttt                               >  1:2707440/1‑100 (MQ=255)
                                                                     cAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCttt                               <  2:1398647/100‑1 (MQ=255)
                                                                       gATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTaa                             <  1:2476208/100‑1 (MQ=255)
                                                                        aTAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTaaa                            <  2:55258/100‑1 (MQ=255)
                                                                         tAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAAc                           >  1:2531426/1‑100 (MQ=255)
                                                                          aaGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACg                          >  1:42033/1‑100 (MQ=255)
                                                                            gACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCt                        >  2:1000349/1‑100 (MQ=255)
                                                                             aCGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTg                       <  2:1627384/100‑1 (MQ=255)
                                                                               gcgTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGc                     <  1:2156398/100‑1 (MQ=255)
                                                                                   cAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGc                 <  1:1124348/100‑1 (MQ=255)
                                                                                   cAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGGAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGc                 >  2:2351721/1‑100 (MQ=255)
                                                                                    aGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCg                <  1:1582036/100‑1 (MQ=255)
                                                                                      cGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCgtg              <  2:728950/100‑1 (MQ=255)
                                                                                      cGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCgtg              <  1:437661/100‑1 (MQ=255)
                                                                                          gCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTAGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCgtgtgt           >  2:1668541/1‑99 (MQ=255)
                                                                                           cATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTc          >  2:605532/1‑99 (MQ=255)
                                                                                           cATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCg         >  2:920725/1‑100 (MQ=255)
                                                                                           cATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCg         >  2:168526/1‑100 (MQ=255)
                                                                                            aTCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGt        <  1:2232449/100‑1 (MQ=255)
                                                                                              cAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGtt       >  2:173169/1‑99 (MQ=255)
                                                                                              cAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTa      <  2:1828018/100‑1 (MQ=255)
                                                                                              cAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTa      <  2:2431563/100‑1 (MQ=255)
                                                                                                ggCGTTACATACCGGCTGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTatc    <  1:2702477/100‑1 (MQ=255)
                                                                                                ggCGTTACATACCGGATGCGGCTACTTAGCGACGAACCCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTat     <  1:1572925/99‑1 (MQ=255)
                                                                                                ggCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTatc    <  1:1003610/100‑1 (MQ=255)
                                                                                                ggCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTatc    >  1:2662267/1‑100 (MQ=255)
                                                                                                ggCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTatc    <  2:844261/100‑1 (MQ=255)
                                                                                                ggCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTatc    >  1:2069812/1‑100 (MQ=255)
                                                                                                 gCctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattcaacgcctgatgcgacgctggcgcgtcttatcaggcctacgcgctgcga   >  2:2311609‑M2/1‑2 (MQ=255)
                                                                                                  cctacacgcttcgattttgtaggccggataaccaaagcgcatccggcattcaacgcctgatgcgacgctggcgcgtcttatcaggcctacgcgctgcgat  >  2:2609872‑M2/1‑1 (MQ=255)
                                                                                                  cctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattcaacgcctgatgcgacgctggcgcgtcttatcaggcctacgcgctgcgat  >  2:32895‑M2/1‑1 (MQ=255)
                                                                                                  cGTTACATACCGGATGCGGCTACTTAGCGACGCAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTatc    <  1:404238/98‑1 (MQ=255)
                                                                                                  cGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTatcaa  >  2:621294/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
GCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTATCAA  >  NC_000913/66714‑66911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.