New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 489959 =NA (NA)7 (0.080) 5/164 NT NA noncoding (1/98 nt) RIP43 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP43 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 3547917 = NA (NA)noncoding (31/87 nt) REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 127 total aligned reads displayed.

CTACAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAG  >  NC_000913/489862‑490058
                                                                                                 |                                                                                                   
gcggagagctgcagcgaagaagaaggagagtgcgggtgatgctggattcgaggcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGcc                                                                                                   >  2:1243027‑M1/98‑100 (MQ=255)
 tACAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCg                                                                                                  >  2:752378/1‑100 (MQ=255)
  gcagagctgcagcgaagaagaagtagagtgcggttgatgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGCCgg                                                                                                 >  2:1920428‑M1/96‑100 (MQ=255)
   cAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCgg                                                                                                 >  2:2237925/1‑99 (MQ=255)
   cAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGa                                                                                                >  1:1152903/1‑100 (MQ=255)
        gCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATgcgg                                                                                           >  1:1507387/1‑100 (MQ=255)
        gCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATgcgg                                                                                           <  1:1540724/100‑1 (MQ=255)
          gATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATgcggcg                                                                                         <  1:1133323/100‑1 (MQ=255)
           attaCCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCTTTGTTCATGCCGGATgcggn                                                                                          <  2:2090705/95‑2 (MQ=255)
            tGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTg                                                                                       <  1:1782837/100‑1 (MQ=255)
            tGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTg                                                                                       >  1:2663129/1‑100 (MQ=255)
            tGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTg                                                                                       <  1:2648804/100‑1 (MQ=255)
              aCCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGAc                                                                                     <  1:2361509/100‑1 (MQ=255)
              aCCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGAc                                                                                     >  1:96523/1‑100 (MQ=255)
              aCCCGACGCCAGCGGTAGGGTAAAAACGAAAGAGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAGGTGCGCGTTGTTCATGCCGGATGCGGCGAGAc                                                                                     >  2:1231624/1‑100 (MQ=255)
               cccGACGCCAGCGGTAGGGTAAAGACGAAAGATCGCAACATTAAGTTGCCCCGAGATTGCTAACAACGTGCGCGTTGTACATGCCGTATACGGCGTGAcc                                                                                    >  2:632129/1‑100 (MQ=25)
               cccGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGAcc                                                                                    >  2:1767998/1‑100 (MQ=255)
               cccGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGAcc                                                                                    >  2:2155506/1‑100 (MQ=255)
               cccGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGAcc                                                                                    >  1:1878131/1‑100 (MQ=255)
               cccGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGAcc                                                                                    >  2:2299187/1‑100 (MQ=255)
               cccGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGCGCGCGTTGTTCATGCCGGATGCGGCGTGagc                                                                                    <  1:1864121/100‑3 (MQ=255)
                ccGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCg                                                                                   >  2:768361/1‑100 (MQ=255)
                ccGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCg                                                                                   <  1:601760/100‑1 (MQ=255)
                    cGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGcc                                                                                 >  2:1572768/1‑98 (MQ=255)
                    cGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCtt                                                                               >  1:938584/1‑100 (MQ=255)
                    cGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCtt                                                                               >  1:821283/1‑100 (MQ=255)
                       cAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATc                                                                            <  2:1493919/100‑1 (MQ=255)
                           ggTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGc                                                                        <  1:623478/100‑1 (MQ=255)
                           ggTAGGGTAAAAACGAAAGGAGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCgtc                                                                        >  2:1673909/1‑98 (MQ=255)
                            gTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGcc                                                                       >  1:1964671/1‑100 (MQ=255)
                            gTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGcc                                                                       >  1:1617783/1‑100 (MQ=255)
                            agtgcggttgatgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGCCGGATGCGGCGTGACCGCCATATCCGGcc                                                                       >  2:1729911‑M1/70‑100 (MQ=255)
                             tAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCt                                                                      <  1:913415/100‑1 (MQ=255)
                              aGGGTAAAAACGAAAGGGGGTAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTa                                                                     >  2:1684784/1‑100 (MQ=255)
                                ggTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACg                                                                   >  1:1750738/1‑100 (MQ=255)
                                ggTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACg                                                                   <  2:587057/100‑1 (MQ=255)
                                ggTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACg                                                                   >  2:61592/1‑100 (MQ=255)
                                cggttgatgccggatgcgatgcttgacgcgtcttatccggcctcctaattcatcccgaatcgtagGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACg                                                                   >  2:1754035‑M1/66‑100 (MQ=255)
                                 ntAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGa                                                                  >  1:685478/2‑100 (MQ=255)
                                 gTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGa                                                                  >  1:2347760/1‑100 (MQ=255)
                                 gTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGa                                                                  >  2:77286/1‑100 (MQ=255)
                                   aaaaaCGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGaaa                                                                <  1:712739/100‑1 (MQ=255)
                                    aaaaCGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAAc                                                               <  2:621284/100‑1 (MQ=255)
                                    aaaaCGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAAc                                                               >  2:1261614/1‑100 (MQ=255)
                                     aaaCGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAAcc                                                              <  1:256310/100‑1 (MQ=255)
                                     aaaCGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAAcc                                                              >  2:282529/1‑100 (MQ=255)
                                      aaCGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCg                                                             >  1:1578714/1‑100 (MQ=255)
                                        cGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCa                                                           <  1:1161175/100‑1 (MQ=255)
                                        cGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCa                                                           <  1:1378118/100‑1 (MQ=255)
                                            aGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGaa                                                       >  1:1422183/1‑100 (MQ=255)
                                              ggggCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAAtt                                                     <  2:1297090/100‑1 (MQ=255)
                                                 gCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCaa                                                  >  2:1171977/1‑100 (MQ=255)
                                                  cAACCTTTAGTTGCCCCGAGATTGCTAACAGAGTGCGCGTTTTTCATTCCGGATGCGGCCTAACAGCCTTATCTAGCCTCCGAACCCGCAAGAATTCa                                                   >  2:136278/1‑98 (MQ=255)
                                                      aTTTAGTTGCCCCGAGATTCCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACTGCCTTATCCGGCCTACGAACCCGCAAGAATTCAatatat                                             <  2:1032821/100‑1 (MQ=255)
                                                       tttAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTCTCCGCCCTACGAAACCGCAAGAATTCAATATAtt                                            >  1:227802/1‑100 (MQ=255)
                                                        ttAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATAtt                                            >  2:2408448/1‑99 (MQ=255)
                                                          aGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCa                                         <  2:1370962/100‑1 (MQ=255)
                                                          aGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCa                                         <  2:204155/100‑1 (MQ=255)
                                                            ttGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAgg                                       <  2:595972/100‑1 (MQ=255)
                                                              gCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAg                                     >  2:722424/1‑100 (MQ=255)
                                                               ccccGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGc                                    >  2:414779/1‑100 (MQ=255)
                                                               ccccGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGc                                    >  1:629821/1‑100 (MQ=255)
                                                               ccccGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGc                                    >  1:571017/1‑100 (MQ=255)
                                                                cccGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGc                                    >  2:1904589/1‑99 (MQ=255)
                                                                cccGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCg                                   >  1:2211790/1‑100 (MQ=255)
                                                                cccGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCg                                   >  1:1539100/1‑100 (MQ=255)
                                                                 ccGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCgg                                  <  2:1751088/100‑1 (MQ=255)
                                                                 ccGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCgg                                  <  1:1625000/100‑1 (MQ=255)
                                                                  cGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGgt                                 >  1:1828010/1‑100 (MQ=255)
                                                                  cGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGgt                                 <  1:904062/100‑1 (MQ=255)
                                                                   gagaTTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGgtg                                >  1:955693/1‑100 (MQ=255)
                                                                     gaTTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTa                              <  2:1990643/100‑1 (MQ=255)
                                                                       ttGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAgg                            <  1:164203/100‑1 (MQ=255)
                                                                       ttGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAgg                            <  2:629819/100‑1 (MQ=255)
                                                                       ttGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAgg                            <  1:2281484/100‑1 (MQ=255)
                                                                       ttGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAgg                            <  1:666097/100‑1 (MQ=255)
                                                                         gCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGcc                          >  1:1146921/1‑100 (MQ=255)
                                                                          cTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCTCAAGAATTCAATATATTGCAGGAGCGGAGTAggg                           >  2:2630565/1‑97 (MQ=255)
                                                                           tAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTg                        >  1:1874931/1‑100 (MQ=255)
                                                                           tAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTg                        <  1:929133/100‑1 (MQ=255)
                                                                           tAACAAAGTGCACGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCATGAATTCACTCTATTGCAGGAGCGGTCTCGCCCTg                        >  2:1439395/1‑100 (MQ=18)
                                                                            aaCAAAGTGCGCGTTGTTCATGCCGGATGCGCCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGACTCCAATATATTCCAGACGCGGTCTAGGCCGGa                       >  2:865250/1‑100 (MQ=18)
                                                                             aCAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGAt                      <  2:836145/100‑1 (MQ=255)
                                                                              cAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTTACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATa                     <  1:1541529/100‑1 (MQ=255)
                                                                              cAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATa                     >  2:294604/1‑100 (MQ=255)
                                                                              cAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATa                     <  2:447184/100‑1 (MQ=255)
                                                                                  gTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCg                 <  2:1413254/100‑1 (MQ=255)
                                                                                  gTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCg                 <  2:2324090/100‑1 (MQ=255)
                                                                                     cgcgTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAg              >  2:2281067/1‑100 (MQ=255)
                                                                                      gcgTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAgc             >  2:1964760/1‑100 (MQ=255)
                                                                                        gttgttCATGCCTCATGCGGCGTGATCTCCTTATCCGGCCTACGAAACCCCAAGAATTCAATATATTGCAGCAGTGGTGTAGTTCTGATAAGAATAgcg            <  2:2443029/99‑1 (MQ=17)
                                                                                          tgttCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAGCGCAt         >  2:1421830/1‑100 (MQ=255)
                                                                                           gttCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAGCGCATc        <  2:2452680/100‑1 (MQ=255)
                                                                                              cATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAGCGCATCAgg     >  1:475322/1‑100 (MQ=255)
                                                                                               aTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAGCGCATCAGGc    >  1:2087866/1‑100 (MQ=255)
                                                                                               aTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAGCGCATCAGGc    <  1:1875727/100‑1 (MQ=255)
                                                                                               aTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAGCGCATCAGGc    >  2:794921/1‑100 (MQ=255)
                                                                                               aTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAGCGCATCAGGc    <  2:2279616/100‑1 (MQ=255)
                                                                                               aTGCCGGATGCGGCGTGACCGCCTTANCCGGNCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAGCGCNTCAGGc    >  1:2252375/1‑100 (MQ=255)
                                                                                                 GCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAg  <  1:1529123‑M1/100‑1 (MQ=255)
                                                                                                 |                                                                                                   
CTACAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAGGAGCGGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAG  >  NC_000913/489862‑490058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.