BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1382908	NA (NA)	4 (0.040)	4/172	NT	NA	noncoding (42/74 nt)	REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	= 1382940	NA (NA)	4 (0.040)	4/172	NT	NA	noncoding (74/74 nt)	REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 113 total aligned reads displayed.

ATAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCTGTGGTGA  >  NC_000913/1382809‑1383007

aTAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCAGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAg                                                                                                     >  2:1501808/1‑100 (MQ=255)

 tAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGg                                                                                                    <  1:2567126‑M1/100‑2 (MQ=255)

    aTTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGgcc                                                                                                  <  1:183349‑M1/99‑4 (MQ=255)

    aTTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCg                                                                                                 >  2:519474/1‑100 (MQ=255)

     ttCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCgg                                                                                                >  1:513065/1‑100 (MQ=255)

           tATGCAGGTGTCGGCGTAAATTCCTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGa                                                                                          <  2:2000290/100‑1 (MQ=255)

             tGCAGGTGTCAGCGTAAATTAGTCTTTCTTATAATCGGCTAAAGAGACGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTTGGCCGGATAAGa                                                                                          <  2:1626529/98‑1 (MQ=255)

              gCAGGTGTGGGCGTATATTTCTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTGATCCGATCTATGTATGTAGGCCGGAt                                                                                              <  2:1907154/93‑1 (MQ=255)

               cAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGTTCTATAAATGTAGGCCAGATAAGATgcg                                                                                      >  2:1015318/1‑100 (MQ=255)

                  gtgtCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTa                                                                                   <  2:1392943/100‑1 (MQ=255)

                    gtCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAgc                                                                                 <  2:2341370/100‑1 (MQ=255)

                     tCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAgca                                                                                <  1:2334934/100‑1 (MQ=255)

                      cGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAgcat                                                                               <  1:117579/100‑1 (MQ=255)

                        gCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAgcatcg                                                                             <  1:848716/100‑1 (MQ=255)

                         cGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAgcatcgc                                                                            >  2:1944299/1‑100 (MQ=255)

                         cGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAgcatcgc                                                                            <  1:695548/100‑1 (MQ=255)

                         cGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGAGCTATAAATGTAGGCCGGATAAGATGCGCTAgcatcgc                                                                            <  2:1472415/100‑1 (MQ=255)

                          gTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAgcatcgca                                                                           <  2:1570258/100‑1 (MQ=255)

                           tAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAgcatcgcat                                                                          >  1:1022426/1‑100 (MQ=255)

                             aaTTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCt                                                                        >  2:1410710/1‑100 (MQ=255)

                              aTTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTG                                                                       <  2:662522‑M2/100‑1 (MQ=255)

                               ttACTCGTTCTGATAATGGTCTAATTTCCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGgccggatgcgatgctagcgcatcttatccgg                                                                      <  2:2195051‑M1/100‑32 (MQ=255)

                                tACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGgccagatgcgatgctagcgcatcttatccggc                                                                     <  1:798667‑M1/100‑33 (MQ=255)

                                tACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGC                                                                     <  1:2136769‑M2/100‑1 (MQ=255)

                                tACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGC                                                                     >  1:250231‑M2/1‑100 (MQ=255)

                                tACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGC                                                                     >  1:122238‑M2/1‑100 (MQ=255)

                                 aCTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGTTAGCATCGCATCTGGCa                                                                    <  1:1534835/100‑1 (MQ=255)

                                 aCTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCa                                                                    >  1:241487/1‑100 (MQ=255)

                                  cTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCAt                                                                   <  2:376137/100‑1 (MQ=255)

                                    cGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTc                                                                 >  2:88913/1‑100 (MQ=255)

                                    cGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTc                                                                 <  2:2171759/100‑1 (MQ=255)

                                     gTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCa                                                                >  2:573223/1‑100 (MQ=255)

                                     gTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCa                                                                <  2:2738455/100‑1 (MQ=255)

                                     gTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCa                                                                >  1:1627226/1‑100 (MQ=255)

                                     gTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCa                                                                <  2:513064/100‑1 (MQ=255)

                                      ttCTGATAATTGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGTATTAGATGCGCTAGCATCGCATCTGGCATTCAg                                                               <  2:1802385/100‑1 (MQ=255)

                                      ttCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCa                                                                <  2:1250910/99‑1 (MQ=255)

                                      ttCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAg                                                               <  1:1262593/100‑1 (MQ=255)

                                      ttCGGATAATGGGCTAAATTGCCGGATGCGGCGCGTGTACTTTATCTGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAg                                                               >  2:1157715/1‑100 (MQ=255)

                                       tCTGATACTCGGCTAAATTGTCGGGTGCGGGGCAAGTACTTTTTCCCTTCTATAAATGTAGGTCGGATAAGATGCGCTAGCATTGCATCTGTTATTCAgc                                                              <  2:1637985/100‑2 (MQ=19)

                                       tCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTAGTTTATCCGATCTATAGATGTTGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAgg                                                              <  2:2598483/100‑1 (MQ=255)

                                       tCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAgg                                                              <  2:60306/100‑1 (MQ=255)

                                        cTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGc                                                             <  1:745126/100‑1 (MQ=255)

                                           aTAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAg                                                          >  2:1158653/1‑100 (MQ=255)

                                           aTAATGGGCTAAATTGCCGGATGAGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAg                                                          >  2:342758/1‑100 (MQ=255)

                                            tAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAgg                                                         >  2:1490732/1‑100 (MQ=255)

                                             aaTGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGt                                                        >  1:1230403/1‑100 (MQ=255)

                                              aTGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTa                                                       >  1:182974/1‑100 (MQ=255)

                                               tGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAg                                                      <  1:657022/100‑1 (MQ=255)

                                                 ggCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCt                                                    >  2:459222/1‑100 (MQ=255)

                                                 ggCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCt                                                    >  1:1823638/1‑100 (MQ=255)

                                                 ggCTAAATTCTCGGTTGCGGCGCGAGTACTTTAGCCGATCTATAAATGTAGGCCGGATCAGGTGCGCTAGCATCGCATCTGGCATTCAGGCGAGGt                                                        >  2:2402585/1‑96 (MQ=255)

                                                  gCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTg                                                   >  2:1116529/1‑100 (MQ=255)

                                                    tAAATTGCCGGATGCTGCGCGAGTACTTTATCCGATCTATATATGTAGGCCGGATAAGTTGCGCTAGCATAGCATATGACATTCAGGCAAGGAAGCTGGt                                                 >  2:194990/1‑100 (MQ=255)

                                                     aaaTTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGgccagatgcgatgctagcgcatcttatccggcctacatttatagatcggataa                                                <  1:2500923‑M1/100‑54 (MQ=255)

                                                      aaTTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGtat                                               >  2:1166400/1‑100 (MQ=255)

                                                           ccGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGtatttatt                                          <  1:2638686/100‑1 (MQ=255)

                                                            cGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTatttattt                                         >  1:869367/1‑100 (MQ=255)

                                                             ggATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTc                                        <  2:1623935/100‑1 (MQ=255)

                                                             ggATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTc                                        <  1:2258750/100‑1 (MQ=255)

                                                             ggATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTc                                        <  2:1624458/100‑1 (MQ=255)

                                                              gATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCa                                       <  2:1005447/100‑1 (MQ=255)

                                                                 gcggcgCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCg                                    <  1:1158658/100‑1 (MQ=255)

                                                                 gcggcgCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCg                                    >  2:1280690/1‑100 (MQ=255)

                                                                 gcggcgCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATAGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCg                                    >  2:1154870/1‑100 (MQ=255)

                                                                 ctcttcgatctACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCg                                    <  2:2628383/90‑1 (MQ=255)

                                                                   ggcgCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTc                                  >  1:398916/1‑100 (MQ=255)

                                                                    gcgcGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCa                                 <  2:196393/100‑1 (MQ=255)

                                                                        gAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATg                             <  1:2546286/100‑1 (MQ=255)

                                                                        gAGTAATTTCTCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCatat                              <  1:88913/99‑1 (MQ=255)

                                                                            aCTTTATCCGATCTATAAATGTAGGTCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTg                         <  2:2290349/100‑1 (MQ=255)

                                                                            aCTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTg                         <  2:2056863/100‑1 (MQ=255)

                                                                            aCTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTg                         >  1:2056876/1‑100 (MQ=255)

                                                                            aCTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTg                         <  1:627750/100‑1 (MQ=255)

                                                                             cTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTgg                        >  1:2412273/1‑100 (MQ=255)

                                                                             cTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTgg                        >  2:737017/1‑100 (MQ=255)

                                                                               ttATCCGGTCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGGGTCATATGCGTgg                        >  2:1437370/1‑98 (MQ=255)

                                                                               ttATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCctacatttatagatcggataaagtactcgcgccgcatccggcaattt                      <  1:2500923‑M2/100‑48 (MQ=255)

                                                                                  tCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATGCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACg                   <  2:1056653/100‑1 (MQ=255)

                                                                                    cGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGt                 <  1:2649940/100‑1 (MQ=255)

                                                                                    cGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGt                 >  1:1636789/1‑100 (MQ=255)

                                                                                     gATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCctacatttatagatcggataaagtactcgcgccgcatccggcaatttagccga                <  1:1417490‑M2/100‑54 (MQ=255)

                                                                                     gATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTa                >  2:87517/1‑100 (MQ=255)

                                                                                         tataGATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAatat            >  1:715764/1‑100 (MQ=255)

                                                                                         tataAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAatat            >  2:2229289/1‑100 (MQ=255)

                                                                                         tataAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAata             <  2:1798281/99‑1 (MQ=255)

                                                                                          ataAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCCACGGTAATAtt           >  1:933183/1‑100 (MQ=255)

                                                                                          ataAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATAtt           <  2:2093445/100‑1 (MQ=255)

                                                                                           taAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTc          >  1:817780/1‑100 (MQ=255)

                                                                                             aaTGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCtg        >  2:304798/1‑100 (MQ=255)

                                                                                             aaTGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCtg        <  2:271039/100‑1 (MQ=255)

                                                                                              aTGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCtgt       <  1:1754120/100‑1 (MQ=255)

                                                                                                gTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCTgtgg     <  1:1327304/100‑1 (MQ=255)

                                                                                                gTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCTgtgg     >  1:1195460/1‑100 (MQ=255)

                                                                                                 tAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCTgtggt    >  2:1725995/1‑100 (MQ=255)

                                                                                                  aGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCTgtggtg   >  2:1419658/1‑100 (MQ=255)

                                                                                                  aGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCTgtggtg   >  1:2172467/1‑100 (MQ=255)

                                                                                                   ggCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCTGTGGTGa  >  1:1982151/1‑100 (MQ=255)

                                                                                                   ggCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCTGTGGTGa  >  2:2023629/1‑100 (MQ=255)

                                                                                                   ggCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATAGGCGTGGCAACGGTAATATTCTGTGGTGa  >  2:635174/1‑100 (MQ=255)

ATAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGGATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTATTTATTTCAGCGTCATATGCGTGGCAACGGTAATATTCTGTGGTGA  >  NC_000913/1382809‑1383007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.