New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3255217 =NA (NA)6 (0.070) 5/164 NT NA noncoding (1/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3255247 = NA (NA)noncoding (31/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 137 total aligned reads displayed.

ATTTTGGCTATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCC  >  NC_000913/3255119‑3255316
                                                                                                  |                                                                                                   
ataaacgccaggttttggggatcgtgccggatgcgatgctggcgcatcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtagGc                                                                                                    >  2:807260‑M1/99‑100 (MQ=255)
ataaacgccaggttttggggatcgtgccggatgcgatgctggcgcatcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtagGc                                                                                                    >  1:2058736‑M1/99‑100 (MQ=255)
aTTTTGGCTATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGc                                                                                                    <  1:1344598/100‑1 (MQ=255)
 taaacgccaggttttggggatcgtgccggatgcgatgctggcgcatcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtagGcc                                                                                                   >  2:2047834‑M1/98‑100 (MQ=255)
  tttGGCTATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCg                                                                                                  >  1:2289264/1‑100 (MQ=255)
   ttGGCTATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCgg                                                                                                 <  2:1938374/100‑1 (MQ=255)
        tATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTCGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGAGgc                                                                                             >  1:895999/1‑99 (MQ=255)
        tATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATgcg                                                                                            >  1:1572157/1‑100 (MQ=255)
         aTGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATgcgg                                                                                           <  2:2612792/100‑1 (MQ=255)
         aTGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATgcgg                                                                                           >  1:1549905/1‑100 (MQ=255)
         aTGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATgcgg                                                                                           <  1:2098212/100‑1 (MQ=255)
          tGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATgcggc                                                                                          >  1:2038492/1‑100 (MQ=255)
          tGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATgcggc                                                                                          >  1:1577783/1‑100 (MQ=255)
           gAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATgcggcg                                                                                         <  2:141198/100‑1 (MQ=255)
             agagATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGaa                                                                                       >  2:840413/1‑100 (MQ=255)
                gaTGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAAc                                                                                    <  1:2222026/100‑1 (MQ=255)
                 aTGTTGAGCGAGCTTGAAGCTATCGTCGCGGATGCTGAAACGCGTTTTGCCGAGGATGAATCTACCGCGTCAAGACAGGTTGCCGGATgcggcg                                                                                         <  2:2161667/94‑1 (MQ=255)
                  tGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGc                                                                                  >  1:1217747/1‑100 (MQ=255)
                   gTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTCCCGCGTAAAGACAGGTTGCCGGATTCGGCGAAAACGcc                                                                                 <  2:1699187/100‑1 (MQ=255)
                   gTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACTGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGcc                                                                                 <  1:1940610/100‑1 (MQ=255)
                   gTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGcc                                                                                 <  1:2587926/100‑1 (MQ=255)
                   gTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGcc                                                                                 <  2:2038479/100‑1 (MQ=255)
                   gTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGcc                                                                                 >  2:494639/1‑100 (MQ=255)
                   gTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGcc                                                                                 <  2:53858/100‑1 (MQ=255)
                    ttGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCt                                                                                >  2:2552194/1‑100 (MQ=255)
                    ttGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCt                                                                                >  2:348861/1‑100 (MQ=255)
                    ttGAGCGAGCTGGAAGCGATCGTCGCGGATGCTGAAGCGCGTTTAGCCGAGGATGGAGCAACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGcc                                                                                 <  2:1469866/99‑1 (MQ=255)
                      gagcgagcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTa                                                                              >  2:1180361/1‑100 (MQ=255)
                         gccgtattcgatgctggcgcatcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtagGCCGGATGCGGCGAAAACGCCTTATcc                                                                           >  1:2469222‑M1/74‑100 (MQ=255)
                         gccggatgcgatgctggcgcatcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtagGCCGGATGCGGCGAAAACGCCTTATcc                                                                           >  2:1214559‑M1/74‑100 (MQ=255)
                          gagcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCg                                                                          <  2:2378282/100‑1 (MQ=255)
                           agcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCgg                                                                         <  2:101331/100‑1 (MQ=255)
                             gatgcgatgctggcgcatcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtagGCCGGATGCGGCGAAAACGCCTTATCCGGcc                                                                       >  2:2683167‑M1/70‑100 (MQ=255)
                             cTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGcc                                                                       >  2:225405/1‑100 (MQ=255)
                             cTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGcc                                                                       <  2:622130/100‑1 (MQ=255)
                             cTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGcc                                                                       >  1:2460593/1‑100 (MQ=255)
                             cTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGcc                                                                       <  1:1550819/100‑1 (MQ=255)
                             cTGGAAGCTATCGGCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGcc                                                                       <  2:247815/100‑1 (MQ=255)
                              atgcgatgctggcgcatcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtagGCCGGATGCGGCGAAAACGCCTTATCCGGCCt                                                                      >  1:283824‑M1/69‑100 (MQ=255)
                               ggAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTa                                                                     >  1:819393/1‑100 (MQ=255)
                                 aaGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACa                                                                   <  1:655950/100‑1 (MQ=255)
                                     tATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAAt                                                               <  1:696534/100‑1 (MQ=255)
                                     gctggcgcatcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtagGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAAt                                                               >  1:1693346‑M1/62‑100 (MQ=255)
                                       ctgtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATcc                                                             <  2:1196630/98‑1 (MQ=255)
                                        ggcgcatcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtagGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCca                                                            >  1:429177‑M1/59‑100 (MQ=255)
                                         gtcgCGGATTCTTAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCca                                                            <  2:2356605/99‑1 (MQ=255)
                                         gtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcag                                                           >  1:1196635/1‑99 (MQ=255)
                                         gtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcag                                                           >  1:302808/1‑99 (MQ=255)
                                         gtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCca                                                            >  2:1569660/1‑99 (MQ=255)
                                          tcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaac                                                          <  1:1079568/100‑1 (MQ=255)
                                          tcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaac                                                          <  2:1781875/100‑1 (MQ=255)
                                                aTGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACAtt                                                    >  1:127706/1‑100 (MQ=255)
                                                aTGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACAtt                                                    >  2:1896441/1‑100 (MQ=255)
                                                 tgtctttacgcggtagcttcatcctcggctaaacgcgtAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTa                                                   >  1:1321614‑M2/39‑100 (MQ=255)
                                                 tGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTa                                                   <  1:2238569/100‑1 (MQ=255)
                                                   cTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTaa                                                  >  1:1034225/1‑99 (MQ=255)
                                                     tttacgcggtagcttcatcctcggctaaacgcgtAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGa                                               >  1:1834479‑M2/35‑100 (MQ=255)
                                                     gAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAACCTCCTTGTTCGGCCTACTACATCCAACAACATTAACGa                                               >  1:1656996/1‑100 (MQ=255)
                                                     gAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGa                                               >  1:2992/1‑100 (MQ=255)
                                                      aaaCGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGaa                                              >  1:1006631/1‑100 (MQ=255)
                                                       aaCGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAAt                                             <  1:2500674/100‑1 (MQ=255)
                                                            GTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAAc                                        >  2:2718713‑M1/1‑100 (MQ=255)
                                                            GTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAAc                                        >  2:2202752‑M1/1‑100 (MQ=255)
                                                            GTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAAc                                        >  1:2063224‑M1/1‑100 (MQ=255)
                                                             tttAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAaaca                                       <  1:2108341/100‑1 (MQ=255)
                                                                aGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAAcc                                    >  2:1509998/1‑100 (MQ=255)
                                                                 gCCGAGGATGAAGCTACCGCGTAAAGACGGGTTGCCGGAGGCGGCGAAAACGCCTGATCCGGCCTACAAAAGCCAACAACATTAACGAATTAaacaac                                     <  2:299202/98‑1 (MQ=38)
                                                                  ccGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCg                                  >  2:1112124/1‑100 (MQ=255)
                                                                  ccGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCg                                  >  2:699882/1‑100 (MQ=255)
                                                                   cGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGt                                 <  1:1180366/100‑1 (MQ=255)
                                                                   cGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGt                                 >  1:517808/1‑100 (MQ=255)
                                                                    gAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTa                                <  2:445319/100‑1 (MQ=255)
                                                                        aTGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGcc                            <  1:2332987/100‑1 (MQ=255)
                                                                         tGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCg                           <  1:1954768/100‑1 (MQ=255)
                                                                            aGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGAc                        <  2:1577776/100‑1 (MQ=255)
                                                                            aGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGAc                        >  2:2690004/1‑100 (MQ=255)
                                                                               tACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAg                     >  2:1982365/1‑100 (MQ=255)
                                                                                aCCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGa                    <  1:602096/100‑1 (MQ=255)
                                                                                aCCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGa                    <  1:926932/100‑1 (MQ=255)
                                                                                  cgcgtAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATg                  <  1:529910‑M2/95‑1 (MQ=255)
                                                                                  cgcgtAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATg                  >  2:1302502‑M2/6‑100 (MQ=255)
                                                                                   gcgtAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgc                 >  2:2564353‑M2/5‑100 (MQ=255)
                                                                                    cgtAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgcg                <  1:1510005‑M2/97‑1 (MQ=255)
                                                                                      tAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGcc              <  1:2104013‑M2/99‑1 (MQ=255)
                                                                                       aaaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCa             <  2:2271718/100‑1 (MQ=255)
                                                                                       aaaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCa             <  1:46994/100‑1 (MQ=255)
                                                                                        aaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAg            >  1:2738725/1‑100 (MQ=255)
                                                                                        aaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAg            <  2:1010618/100‑1 (MQ=255)
                                                                                        aaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAg            >  2:1666486/1‑100 (MQ=255)
                                                                                         aGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgc           <  2:1685249/100‑1 (MQ=255)
                                                                                         aGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgc           <  2:1684207/100‑1 (MQ=255)
                                                                                            cAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatc        >  1:1287979/1‑100 (MQ=255)
                                                                                             aGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGGATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcg       <  1:2576606/100‑1 (MQ=255)
                                                                                             aGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcg       <  1:2537816/100‑1 (MQ=255)
                                                                                             aGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcg       <  1:1873387/100‑1 (MQ=255)
                                                                                             aGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcg       <  1:2437240/100‑1 (MQ=255)
                                                                                              ggTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcgc      >  1:1462282/1‑100 (MQ=255)
                                                                                              ggTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcgc      >  1:519954/1‑100 (MQ=255)
                                                                                               gTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcgca     >  1:2529043/1‑100 (MQ=255)
                                                                                                  GCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATcc  <  2:109749‑M1/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
ATTTTGGCTATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCC  >  NC_000913/3255119‑3255316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.