New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4626299 =112 (1.120)3 (0.030) 3/168 NT 2.9% coding (388/1383 nt) radA DNA repair protein
?NC_000913 4626342 = 96 (1.020)coding (431/1383 nt) radA DNA repair protein
Rejected: Frequency below cutoff threshold.

Only 100 of 135 total aligned reads displayed.

TGCTACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTG  >  NC_000913/4626243‑4626440
                                                                                                   |                                                                                                  
gatctgttcgatgctggtttccgacaacatattgagattgtcagtcggcaggccaaGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCt                                                                                                    >  1:590147‑M1/57‑100 (MQ=255)
 gctACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGGCACCGGCGAAGAGTCGCTGCAGCAGGTGGCAATGCGCGCTCATCGCCtt                                                                                                   <  2:2322363/100‑1 (MQ=255)
  ctACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTg                                                                                                  >  1:1114782/1‑100 (MQ=255)
  ctACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTg                                                                                                  >  1:2731162/1‑100 (MQ=255)
   tACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAGACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTg                                                                                                  <  2:1162263/99‑1 (MQ=255)
   tACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTgg                                                                                                 <  2:931975/100‑1 (MQ=255)
   tACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTATATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTgg                                                                                                 <  2:1754407/100‑1 (MQ=255)
    acggCAAGCGCTGTGCAAACTGGCCCGGCAGATGAAAACGGTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTgg                                                                                                 <  2:2141963/96‑1 (MQ=255)
     gttcgatgctggtttccgacaacatattgagattgtcagtcggcaggccaaGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGcc                                                                                               >  1:1214236‑M1/52‑100 (MQ=255)
     cTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGcc                                                                                               >  2:986764/1‑100 (MQ=255)
       gCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCt                                                                                              >  2:1676028/1‑99 (MQ=255)
       gCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTg                                                                                             >  2:2370848/1‑100 (MQ=255)
       gCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTg                                                                                             >  1:1305062/1‑100 (MQ=255)
        cAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGc                                                                                            >  1:2175771/1‑100 (MQ=255)
         aaaCGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGcc                                                                                           <  2:2425935/100‑1 (MQ=255)
          aaCGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCg                                                                                          <  2:807027/100‑1 (MQ=255)
            cGCTGTGCAAACTGGCCCAGCAGATGAAATCGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGAc                                                                                        <  1:1276963/100‑1 (MQ=255)
            cGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACTGGCGAAGAGTCGCTGCAACCGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGAc                                                                                        >  1:1970887/1‑100 (MQ=255)
            cGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGAc                                                                                        <  2:534395/100‑1 (MQ=255)
             gCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACt                                                                                       >  1:1656829/1‑100 (MQ=255)
              cTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTg                                                                                      <  1:695818/100‑1 (MQ=255)
                gtgCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGAc                                                                                    >  2:582651/1‑100 (MQ=255)
                 tgCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACa                                                                                   <  2:2139763/100‑1 (MQ=255)
                 tgCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACa                                                                                   >  2:333055/1‑100 (MQ=255)
                 tgCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACa                                                                                   >  2:1413347/1‑100 (MQ=255)
                 tgCAAACTGGCCCAGCAGATGAAAACACTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGAGTGACa                                                                                   >  2:394774/1‑100 (MQ=255)
                  gCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACaa                                                                                  >  2:2677069/1‑100 (MQ=255)
                      aCTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAAtctc                                                                              <  1:601254/100‑1 (MQ=255)
                       cTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCa                                                                             <  2:374331/100‑1 (MQ=255)
                        tGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCaa                                                                            <  2:941731/100‑1 (MQ=255)
                          gCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAata                                                                          >  1:3497/1‑100 (MQ=255)
                          gCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAata                                                                          <  1:2659567/100‑1 (MQ=255)
                          gCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAata                                                                          >  1:234742/1‑100 (MQ=255)
                           cccAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAatat                                                                         >  1:1746359/1‑100 (MQ=255)
                           cccAGCAGATGAAAACGCTGTAGGGCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCGGCCGACTGACAATCTCAatat                                                                         <  1:2387654/100‑1 (MQ=255)
                               gcagATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATAtgttg                                                                     >  1:2359729/1‑100 (MQ=255)
                               gcagATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATAtgttg                                                                     <  1:2402548/100‑1 (MQ=255)
                                   aTGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCgg                                                                 <  2:1193488/100‑1 (MQ=255)
                                   aTGAAAACGCTGTATGTCACCGGCGAAGAGTCGATGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCAGCCGACTGACAATCTCAATATGTTGTCgg                                                                 >  2:1654832/1‑100 (MQ=255)
                                    tGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGa                                                                <  1:2017549/100‑1 (MQ=255)
                                     gAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGaa                                                               >  2:340290/1‑100 (MQ=255)
                                      aaaaCGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGaaa                                                              >  2:263325/1‑100 (MQ=255)
                                       aaaCGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAAc                                                             >  1:2533081/1‑100 (MQ=255)
                                       aaaCGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAAc                                                             >  1:1937419/1‑100 (MQ=255)
                                        aaCGCTGTATGTCACCGTCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAAcc                                                            <  1:263325/100‑1 (MQ=255)
                                         aCGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCa                                                           >  1:983612/1‑100 (MQ=255)
                                          cGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAg                                                          <  2:2706699/100‑1 (MQ=255)
                                          cGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAg                                                          <  2:1970876/100‑1 (MQ=255)
                                          cGCTGTATGTCACCGGCGAAGAGACGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAAcccg                                                          >  2:1754970/1‑98 (MQ=255)
                                           gCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGc                                                         >  2:2502300/1‑100 (MQ=255)
                                              gTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATc                                                      >  1:457785/1‑100 (MQ=255)
                                               tATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCg                                                     <  2:969819/100‑1 (MQ=255)
                                                 tGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGaa                                                   >  2:2217177/1‑100 (MQ=255)
                                                  gTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAAc                                                  <  2:1961316/100‑1 (MQ=255)
                                                   tCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACa                                                 >  1:2274014/1‑100 (MQ=255)
                                                    ccaaggcgatgagcgcgcattgccacctgttgcagcgactcttcgccTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAg                                                >  1:616097‑M2/48‑100 (MQ=255)
                                                     aCCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGa                                               <  1:888413/100‑1 (MQ=255)
                                                     aCCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGa                                               <  2:439492/100‑1 (MQ=255)
                                                      ccGGCGAAGAGTCGCTGAAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAAc                                                  <  2:927135/96‑1 (MQ=255)
                                                       aggcgatgagcgcgcattgccacctgttgcagcgactcttcgccTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATc                                             >  1:590147‑M2/45‑100 (MQ=255)
                                                        GGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCt                                            <  2:1147900‑M1/100‑1 (MQ=255)
                                                        GGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCt                                            <  2:1380685‑M1/100‑1 (MQ=255)
                                                         GCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTg                                           <  2:1541854‑M1/100‑1 (MQ=255)
                                                          cGAAGAGTCGCTGCAACAGGAGAAAATGCGCGCCCATAGCCTTAACCTGCCGACTCACAATCTCAATCTGTAGTCAGAAACCAGCATAGAACAGa                                               >  2:1593810/1‑95 (MQ=255)
                                                             agagTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTg                                       >  2:1713326/1‑100 (MQ=255)
                                                                gTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGAtt                                    >  2:185422/1‑100 (MQ=255)
                                                                gTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGAtt                                    >  1:2707248/1‑100 (MQ=255)
                                                                  cGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGCTTGc                                  >  2:465634/1‑100 (MQ=255)
                                                                  cGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGc                                  >  1:616289/1‑100 (MQ=255)
                                                                      gCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaa                              <  1:2335603/100‑1 (MQ=255)
                                                                       cAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaag                             <  2:359859/100‑1 (MQ=255)
                                                                       cAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaag                             >  2:1419229/1‑100 (MQ=255)
                                                                        aaCAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaaga                            >  1:920824/1‑100 (MQ=255)
                                                                        aaCAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaaga                            <  1:986768/100‑1 (MQ=255)
                                                                          cAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGaagaag                          <  1:2069747/100‑1 (MQ=255)
                                                                          cAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGaagaag                          >  1:303983/1‑100 (MQ=255)
                                                                          cAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGaagaag                          <  2:645958/100‑1 (MQ=255)
                                                                          cAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGaagaag                          <  1:421745/100‑1 (MQ=255)
                                                                            ggTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAagag                        <  1:1061329/100‑1 (MQ=255)
                                                                             gTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAagag                        <  2:1661662/99‑1 (MQ=255)
                                                                             gTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGc                       >  2:1389569/1‑100 (MQ=255)
                                                                             gTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGc                       <  1:2681190/100‑1 (MQ=255)
                                                                               ggCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCaa                     >  1:2325958/1‑100 (MQ=255)
                                                                                gCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAAc                    <  2:1154332/100‑1 (MQ=255)
                                                                                  aaTGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCg                  <  1:1541861/100‑1 (MQ=255)
                                                                                  aaTGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCg                  <  1:1254072/100‑1 (MQ=255)
                                                                                  aaTGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCg                  >  1:334736/1‑100 (MQ=255)
                                                                                        cgcTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTg            <  2:121150/100‑1 (MQ=255)
                                                                                          cTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGAt          <  2:845960/100‑1 (MQ=255)
                                                                                           tCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATg         >  1:979471/1‑100 (MQ=255)
                                                                                            cATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATgg        <  2:2359714/100‑1 (MQ=255)
                                                                                            cATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATgg        >  2:486867/1‑100 (MQ=255)
                                                                                             aTCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGt       >  2:544548/1‑100 (MQ=255)
                                                                                             aTCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGt       >  1:1989527/1‑100 (MQ=255)
                                                                                                gccTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAAt    >  2:137505‑M2/4‑100 (MQ=255)
                                                                                                gccTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAACAACCGAAGCTGATGGTAAt    >  1:2619187‑M2/4‑100 (MQ=255)
                                                                                                gCCTTGACCAGACGACTGACAATCTCAATATGATGTCGGAAACCAACAACGAACAAAACTGCCTGATTGAAGAAGAAAAGAAACCAACGCTAATGGTAAt    >  2:1207127/1‑100 (MQ=255)
                                                                                                 ccTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAAtt   >  2:1457673‑M2/3‑100 (MQ=255)
                                                                                                  cTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTg  <  1:385723‑M2/99‑1 (MQ=255)
                                                                                                  cTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTg  <  2:2484803‑M2/99‑1 (MQ=255)
                                                                                                   |                                                                                                  
TGCTACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTG  >  NC_000913/4626243‑4626440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.