New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4639801 =106 (1.060)5 (0.050) 4/166 NT 5.1% coding (506/717 nt) arcA response regulator in two‑component regulatory system with ArcB or CpxA
?NC_000913 4639844 = 87 (0.940)coding (463/717 nt) arcA response regulator in two‑component regulatory system with ArcB or CpxA
Rejected: Frequency below cutoff threshold.

Only 100 of 122 total aligned reads displayed.

TCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCAT  >  NC_000913/4639745‑4639943
                                                                                                   |                                                                                                   
ctacaagttcaatggttgggaactggacatcaacagccgttcgttgatcggccctgATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATc                                                                                                     >  1:1679781‑M1/57‑100 (MQ=255)
 cttcAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCa                                                                                                    <  2:991199/100‑1 (MQ=255)
 cttcAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCa                                                                                                    >  1:991203/1‑100 (MQ=255)
  ttcAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAg                                                                                                   <  2:2175653/100‑1 (MQ=255)
  acaagttcaatggttgggaactggacatcaacagccgttcgttgatcggccctgATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAg                                                                                                   >  1:2243951‑M1/55‑100 (MQ=255)
   tcAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAgg                                                                                                  <  1:2417703/100‑1 (MQ=255)
   caagttcaatggttgggaactggacatcaacagccgttcgttgatcggccctgATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAgg                                                                                                  >  1:814297‑M1/54‑100 (MQ=255)
    cagcagTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAggg                                                                                                 <  1:2728029/100‑1 (MQ=255)
     agttcaatggttgggaactggacatcaacagccgttcgttgatcggccctgATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGc                                                                                                >  2:1261901‑M1/52‑100 (MQ=255)
     agttcaatggttgggaactggacatcaacagccgttcgttgatcggccctgATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGc                                                                                                >  1:946500‑M1/52‑100 (MQ=255)
     agcagTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGc                                                                                                <  2:972456/100‑1 (MQ=255)
       cagTTCAGCACGGGACTGAATTTTTCATGGGTTTTCACAGAAGTGTAGCATGGCGCGGCACTCATTGCGCGGCAACTTGTATTGCTCGCCGTCAcggac                                                                                               >  2:2112799/1‑97 (MQ=255)
        agTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGa                                                                                             <  1:1738368/100‑1 (MQ=255)
        agTTCAGCACGGGACTGAATGTTGCCTGGGTGTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCGTGTACTGCTCGCCATCAGGGCCGa                                                                                             <  2:1066080/100‑1 (MQ=255)
         gTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGAt                                                                                            >  1:1278106/1‑100 (MQ=255)
         gTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGAt                                                                                            <  1:515196/100‑1 (MQ=255)
         gTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGAt                                                                                            >  2:186910/1‑100 (MQ=255)
            cAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCaa                                                                                         <  1:2554960/100‑1 (MQ=255)
             aGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCaac                                                                                        <  1:1377082/100‑1 (MQ=255)
              gCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCaacg                                                                                       >  2:1703465/1‑100 (MQ=255)
              ccACGGGACTGAGTTTTGCCTGGGTTTTCACAGAAGTGAAGCATGCCGCGGAACTCGATGCGGGGCAGCTTGTACTGCTCGCCATGAGGGCCGATCaa                                                                                         >  2:1463315/2‑98 (MQ=255)
               cACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCaacga                                                                                      >  1:1741386/1‑100 (MQ=255)
                 cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCaacgaac                                                                                    >  2:1821402/1‑100 (MQ=255)
                  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGTTCGCCATCAGGGCCGATCaacgaacg                                                                                   <  2:911007/100‑1 (MQ=255)
                  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCaacgaacg                                                                                   <  1:1717831/100‑1 (MQ=255)
                  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCaacgaacg                                                                                   <  1:863348/100‑1 (MQ=255)
                    gACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGc                                                                                 <  2:592538/100‑1 (MQ=255)
                    gACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTCGTACTGCTCGCCATCAGGGCCGATCAACGAACGGc                                                                                 <  2:264163/100‑1 (MQ=255)
                        gAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCt                                                                                >  2:1338060/1‑97 (MQ=255)
                        gAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGtt                                                                             >  1:1511606/1‑100 (MQ=255)
                        gAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGtt                                                                             >  2:1369010/1‑100 (MQ=255)
                         aaTTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTg                                                                            >  1:1404670/1‑100 (MQ=255)
                         aaTTTTGCCTGGGTGTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTg                                                                            <  2:1146560/100‑1 (MQ=255)
                          aTTTGGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGa                                                                           >  2:254072/1‑100 (MQ=255)
                           tttgGCCTGGGTTTTCACAGAAGTGATGCATGGCGCTGAACTCGCTGCGCCGCAGCTTGTACTGCTCGCTATCAGGGCCGATCAACGAACGGCTGTTGAt                                                                          <  2:714031/100‑1 (MQ=255)
                            tttGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATg                                                                         <  1:529391/100‑1 (MQ=255)
                               gCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTcc                                                                      >  1:1636348/1‑100 (MQ=255)
                               gCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTcc                                                                      >  1:554148/1‑100 (MQ=255)
                                    ggTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTc                                                                 >  1:2484141/1‑100 (MQ=255)
                                    ggTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTc                                                                 >  1:2421805/1‑100 (MQ=255)
                                     gTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTcc                                                                >  1:618932/1‑100 (MQ=255)
                                     gTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTcc                                                                <  2:2143659/100‑1 (MQ=255)
                                       tttCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCa                                                              <  1:694528/100‑1 (MQ=255)
                                         tCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAAc                                                            >  2:2654781/1‑100 (MQ=255)
                                          cacaGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAAcc                                                           <  1:2528834/100‑1 (MQ=255)
                                           acaGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCa                                                          <  2:669119/100‑1 (MQ=255)
                                            caGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCAt                                                         >  2:602649/1‑100 (MQ=255)
                                            caGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCAt                                                         <  1:2077252/100‑1 (MQ=255)
                                             aGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCAtt                                                        <  2:1746704/100‑1 (MQ=255)
                                              gAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTg                                                       <  1:854340/100‑1 (MQ=255)
                                               aaGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGa                                                      <  1:2654799/100‑1 (MQ=255)
                                               aaGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGa                                                      <  1:39867/100‑1 (MQ=255)
                                                aGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGaa                                                     >  2:2486477/1‑100 (MQ=255)
                                                 gTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAAc                                                    <  1:1636359/100‑1 (MQ=255)
                                                  tGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACt                                                   <  1:583753/100‑1 (MQ=255)
                                                  gccctgatggcgagcagtacaagctgccgcgcagcgagttccgcgccatCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACt                                                   >  1:946500‑M2/50‑100 (MQ=255)
                                                   gAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACtt                                                  <  2:141907/100‑1 (MQ=255)
                                                    cctgatggcgagcagtacaagctgccgcgcagcgagttccgcgccatCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTg                                                 >  1:814297‑M2/48‑100 (MQ=255)
                                                     ctgatggcgagcagtacaagctgccgcgcagcgagttccgcgccatCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGt                                                >  1:2243951‑M2/47‑100 (MQ=255)
                                                     aGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGt                                                >  2:2403960/1‑100 (MQ=255)
                                                      gCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTa                                               <  1:463462/100‑1 (MQ=255)
                                                      gCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTa                                               <  1:607606/100‑1 (MQ=255)
                                                       cATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAg                                              <  1:1369016/100‑1 (MQ=255)
                                                       cATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAg                                              <  1:2629907/100‑1 (MQ=255)
                                                       cATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGCGCCGATCAACGAACGGCTGTTGATGTTTAGTTTCAACCCATTGAACTTGTAg                                              >  2:347190/1‑100 (MQ=255)
                                                        ATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGc                                             <  1:1105010‑M1/100‑1 (MQ=255)
                                                          GGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCtt                                           <  2:1183502‑M1/100‑1 (MQ=255)
                                                           GCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAGCTTGTAGCttt                                          >  2:2676627‑M1/1‑100 (MQ=255)
                                                            CGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTc                                         >  2:1998897‑M1/1‑100 (MQ=255)
                                                            CGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTc                                         >  1:1222448‑M1/1‑100 (MQ=255)
                                                                   cTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTa                                  >  2:973966/1‑100 (MQ=255)
                                                                   cTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTa                                  >  2:415870/1‑100 (MQ=255)
                                                                    tCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTac                                 <  1:1821409/100‑1 (MQ=255)
                                                                    tCGCTGCGCGGCAGCTTGTACTGCTCACCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTac                                 >  1:1675114/1‑100 (MQ=255)
                                                                       cTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCGTTGAAAGCTacaag                              <  1:1223661/100‑4 (MQ=255)
                                                                         gcgcGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGt                            <  1:1979095/100‑1 (MQ=255)
                                                                         gcgcGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGt                            <  1:451190/100‑1 (MQ=255)
                                                                          cgcgGCAGCTTGTACTGCTCGCCATCAGGGCCAATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGtt                           >  1:2609505/1‑100 (MQ=255)
                                                                            cttccgatcttACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGttct                         <  2:2118226/90‑1 (MQ=255)
                                                                            cgGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGttct                         >  1:2172397/1‑100 (MQ=255)
                                                                             ggCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCGTTGAAAGCTacaagttcagt                        <  1:1862972/100‑10 (MQ=255)
                                                                               tcttccgatcTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCg                      <  2:2689128/91‑1 (MQ=255)
                                                                                aGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGc                     >  1:2015585/1‑100 (MQ=255)
                                                                                aGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGc                     <  1:2486493/100‑1 (MQ=255)
                                                                                  cTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTg                   >  1:2714414/1‑100 (MQ=255)
                                                                                    tGTACTGCTCGCCATCAGGGCCGATCATCGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGAc                 <  2:640753/100‑1 (MQ=255)
                                                                                    tGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGAc                 <  2:123625/100‑1 (MQ=255)
                                                                                    tGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGAc                 <  2:413661/100‑1 (MQ=255)
                                                                                    tGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGAc                 <  2:281539/100‑1 (MQ=255)
                                                                                      tACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGttctagatcggaag               >  1:2118239/1‑90 (MQ=255)
                                                                                        cTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGACGTCCAGTTCCCAACCATTGAACTTTTAGCTTTCAACGCTACGACGCTGTTCGCTgccggt              >  2:766226/1‑94 (MQ=255)
                                                                                         tGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTAc            >  1:2286392/1‑100 (MQ=255)
                                                                                         tGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTAc            >  1:862751/1‑100 (MQ=255)
                                                                                          gCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTAcc           <  1:1299033/100‑1 (MQ=255)
                                                                                            tCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCa         <  1:389331/100‑1 (MQ=255)
                                                                                             cgccatCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAg        >  2:1369906‑M2/7‑100 (MQ=255)
                                                                                              gccatCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGa       >  1:109663‑M2/6‑100 (MQ=255)
                                                                                                  tCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTc    >  1:2205260‑M2/2‑99 (MQ=255)
                                                                                                  tCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCa   <  2:1065291‑M2/99‑1 (MQ=255)
                                                                                                   cAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCAt  <  2:2020466/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCAT  >  NC_000913/4639745‑4639943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.