| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4488511 | NA (NA) | 11 (0.080) | 7/170 | NT | NA | noncoding (7/36 nt) | REP343 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP343 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4488537 | NA (NA) | noncoding (33/36 nt) | REP343 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP343 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
ATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCAtgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4488413‑4488511‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAA < NC_000913/4488537‑4488435 ATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCAT < 2:69499/100‑1ATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCAT < 1:16962/100‑1 TAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTGAAATTCAATATATTGCAGTGGGGTGGGCATG < 1:1653011/100‑1 AAAGGGAGCGAAAGCTCCATTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATAGTGCAGTGGGGTGGGCATG < 1:3344247/99‑1 AAGGGAGCGATAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGAT < 1:2175657/100‑1 TTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCTGGCGCGTCTTA < 2:3379648/100‑1 TTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATGCGACGCTGGCGCGTCTTATCA < 1:2832189/100‑1 ATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCTGGCGCGTCTTATCATG < 1:763009/100‑1 ATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCTGGCGCGTCTTATCATG < 2:102348/100‑1 TTGTTAGCTAAGTTTGCTTTGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATGCGACGCTGGCGCGTCTTATCATGC < 1:1909396/100‑1 TTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCTGGCGCGTCTTATCATGC < 2:3063184/100‑1 TTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATGCAATCTCTTGCAGTGGGGTGGGCCTGATGCGACGCTGGCGCGTCTTATCATGC < 1:308505/100‑1 TGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATGCGACGCTGGCGCGTCTTATCATGCC < 1:244539/100‑1 GTTAGCAAAGTGTGCTTCGTTCATTTCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATGCGACGCTGGCGCGTCTTATCATGCCC < 1:1799842/100‑1 GTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATGCGACGCTGGCGCGTCTTATCATGCCC < 2:3145981/100‑1 TAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATGCGACGCTGGCGCGTCTTATCATGCCCAC < 1:3204245/100‑1 CATGATGCGACGCTGGCGCGTATTATCATGCCCACCCCACTGAAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAAT > 2:2624750/1‑100 TGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAA > 2:1734761/1‑100 GATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAAT < 2:1012339/100‑1 GATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAAT < 2:1435990/100‑1 TGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAA > 1:1508707/1‑100 ATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCAtgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4488413‑4488511‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAA < NC_000913/4488537‑4488435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |