New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4323250 =	NA (NA)	15 (0.120)	6/164	NT	NA	noncoding (5/87 nt)	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	4323280 =	NA (NA)					noncoding (35/87 nt)	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences

TGAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4323355‑4323250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCG  >  NC_000913/4323280‑4323376                                                                                                                                                                                                             TGAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTA                                                                                                         >  2:3410192/1‑100  GAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTAT                                                                                                        >  2:3731034/1‑100  GAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTAT                                                                                                        >  2:1817791/1‑100  GAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTAT                                                                                                        >  2:2818610/1‑100    GTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACCATGTGCAGGCGTTGATCCCGGATGCGGTGCCAGCACCTTATCC                                                                                                      >  2:3406052/1‑100    GTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCC                                                                                                      >  2:836296/1‑100    GTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCC                                                                                                      >  2:535976/1‑100    GTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCC                                                                                                      >  2:1201828/1‑100    GTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCC                                                                                                      >  1:2763638/1‑100    GTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCC                                                                                                      <  1:207149/100‑1     TAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCG                                                                                                     <  1:2146627/100‑1     TAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCG                                                                                                     <  2:1681363/100‑1      AAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGG                                                                                                    <  1:2317619/100‑1      AAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGG                                                                                                    >  2:3164915/1‑100      AAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGG                                                                                                    <  1:2913876/100‑1      AAAGCGGTGCAGTAAATCGTAGGTCGGATAAGA‑TCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC                                                                                                   >  1:1886363/1‑100      AAAGCGGTGCAGTAAAGCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGG                                                                                                    <  1:2231300/100‑1       AAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC                                                                                                   >  2:1050886/1‑100       AAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC                                                                                                   >  1:3247094/1‑100       AAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC                                                                                                   >  1:2432846/1‑100         GCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATAAGGTGCTTGCACCGCATCCGGCAT                                                                                                 <  1:1201834/100‑1          CGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATAAGGTGCTTGCACCGCATCCGGCATC                                                                                                <  2:1634174/100‑1                                                                        TTGATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCAC                                  >  1:247874/1‑100                                                                          GATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGCTGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCG                                >  2:317010/1‑100                                                                          GATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCG                                >  1:1932750/1‑100                                                                          GATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGAACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCG                                >  2:317009/1‑100                                                                           ATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAATGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGC                               >  1:558678/1‑100                                                                           ATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGC                               >  1:1248785/1‑100                                                                           ATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGC                               >  2:2430251/1‑100                                                                           ATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGC                               >  2:435794/1‑100                                                                           ATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGC                               >  1:1587999/1‑100                                                                           ATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGC                               >  1:2965441/1‑100                                                                             GCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGTGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTT                             >  1:2815152/1‑100                                                                             GCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTT                             >  2:492743/1‑100                                                                             GCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTT                             >  1:15913/1‑100                                                                                     CGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACC                     <  2:247879/100‑1                                                                                          CAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACT                >  2:3206567/1‑100                                                                                                    ATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTT      >  2:1595339/1‑100                                                                                                    ATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTT      <  2:2232050/100‑1                                                                                                    ATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCCCGCTT      >  1:1514856/1‑100                                                                                                      CCGGCATCAACGCCTGCACATTGTCGGATGCGACGCAGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAG    >  2:2696593/1‑100                                                                                                       CGGCATCAACGCCTGCACATTGTCGGATGCAACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCAGCGCGCTTAGC   >  1:2508270/1‑100                                                                                                        GGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCG  <  1:1595330/100‑1                                                                                                        GGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCG  <  1:651899/100‑1                                                                                                         GCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCG  <  2:3463030/99‑1                                                                                                                                                                                                             TGAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4323355‑4323250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCG  >  NC_000913/4323280‑4323376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.