New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4623082157 (1.160)20 (0.150) 9/170 NT 12.1% coding (1314/1332 nt) yjjJ putative protein kinase
?NC_000913 = 4623098 141 (1.090)coding (1330/1332 nt) yjjJ putative protein kinase
Rejected: Frequency below cutoff threshold.

GCAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4622980‑4623082
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agttACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCTGG  <  NC_000913/4623098‑4623000
                                                                                                                                                                                                          
GCAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAA                                                                                                        >  1:3147624/1‑100
 gatcTCTGGCGACCGTTTGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAG                                                                                                       >  1:2650057/5‑100
 CAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAG                                                                                                       >  2:2167615/1‑100
 CAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAG                                                                                                       <  1:3064117/100‑1
 CAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAA                                                                                                        <  2:1124177/99‑1
  AGTTCTGGCAAACGGTCGCCAGATATCCGCGTATCAGCGAGGCTTTTCGCCACATTGAGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGT                                                                                                      <  1:1568516/100‑1
  AGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGT                                                                                                      <  1:1694186/100‑1
   tcTCTGGCGACCGTTTGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCCAGAAATGCCGGAGAAAATCCGGCAAATCGAAGAGAAAGTT                                                                                                     >  1:2991051/3‑100
   GTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTT                                                                                                     >  1:1133050/1‑100
   GTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTT                                                                                                     >  2:321565/1‑100
   GTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGT                                                                                                      >  2:2219371/1‑99
                    CCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTT‑‑‑‑GCCCATGCGGGCAACTT                                                                                <  2:661879/100‑1
                       GAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACT                                                                                 <  1:2881153/100‑1
                       GAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTT‑‑‑‑GCCCATGCGGGCAACTTGCT                                                                             <  1:225605/100‑1
                        AGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTT                                                                                <  2:2737563/100‑1
                         GATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTT‑‑‑‑GCCCATGCGGGCAACTTTCTCT                                                                           <  2:2775664/100‑1
                          ATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTC                                                                              <  2:1112895/100‑1
                           TCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCT                                                                             <  2:3592611/100‑1
                            CCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCTC                                                                            <  1:2054882/100‑1
                            CCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCT                                                                             <  1:2803169/99‑1
                             CGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCTCT                                                                           <  2:2537181/100‑1
                             CGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCTCT                                                                           <  1:3436410/100‑1
                             CGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCTCT                                                                           <  2:1204476/100‑1
                             CGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCTC                                                                            <  1:1628704/99‑1
                               ctTATCAGCGAGGCGTTTCGCTACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCTCTTC                                                                         <  1:927801/98‑1
                               CGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCTCTTC                                                                         <  2:3211421/100‑1
                               CGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCTCTTC                                                                         <  2:1207119/100‑1
                                  ataAGCGAGGCGTTTCGCCACATTGCGCAAGAAATAAAAGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCTCTTCGAT                                                                      <  1:2637832/97‑1
                                  ATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCGCCCATGCGGGCAACTTTCTCTTCGAT                                                                      <  1:1479075/100‑1
                                      GCGAGGCATTTCGCAACATTGCGCAAGAAATGCAGGAAAAAATCCGGCAAATCGAAGAGAAAGTTACCCCCCCATGCGGGCAACTTTCTCTTCGATTTGC                                                                  <  1:1269499/100‑1
                                                                                             AGAGAAAGTTGCCCGCATGGGCGGGTAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCG           >  1:2560319/1‑100
                                                                                                GAAAGTTGCCCGCATGGGCGGGTAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGG          >  1:1253858/1‑98
                                                                                                   AGTTACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTC     <  2:1951694/100‑1
                                                                                                    GTTACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCT    >  2:1687158/1‑100
                                                                                                    GTTACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCT    >  1:2373130/1‑100
                                                                                                    GTTACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCT    >  2:489022/1‑100
                                                                                                    GTTACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCT    >  1:1534504/1‑100
                                                                                                     TTACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCTG   <  1:759140/100‑1
                                                                                                     TTACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCTG   <  2:3237574/100‑1
                                                                                                     TTACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCTG   <  2:3724139/100‑1
                                                                                                      TACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCTGG  >  1:800516/1‑100
                                                                                                      TACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCTGG  <  2:2883306/100‑1
                                                                                                      TACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCTGG  >  1:496278/1‑100
                                                                                                                                                                                                          
GCAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4622980‑4623082
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agttACCCGCCCATGCGGGCAACTTTCTCTTCGATTTGCCGGATTTTTTCCGGCATTTCTTGCGCAATGTGGCGAAACGCCTCGCTGATACGCGGATCTCTGG  <  NC_000913/4623098‑4623000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.