New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2568185 =	NA (NA)	6 (0.060) +ACCCGCTACACACCCCGCAG	6/138	NT	NA	noncoding (47/183 nt)	REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913	= 3217522	NA (NA)					noncoding (89/89 nt)	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences

TCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2568244‑2568185 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTC  <  NC_000913/3217522‑3217443                                                             ||||||||||||||||||||                                                                                 TCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCG                                                               <  1:252902/99‑1         TGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATC                                                      <  1:1650604/100‑1            CGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGG                                                   <  2:2475682/100‑1             GCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGC                                                  <  1:1572915/100‑1              CGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGCC                                                 <  1:1914947/100‑1                           GGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTA                                    <  2:1162712/100‑1                                                             ACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTC  <  2:3724986/100‑1                                                             ||||||||||||||||||||                                                                                 TCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGTCTTATCCAGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2568244‑2568185 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTC  <  NC_000913/3217522‑3217443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.