BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2568185 =	NA (NA)	6 (0.060) +ACCCGCTACACACCCCGCAG	6/138	NT	NA	noncoding (47/183 nt)	REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
*	?	NC_000913	= 3217522	NA (NA)	6 (0.060) +ACCCGCTACACACCCCGCAG	6/138	NT	NA	noncoding (89/89 nt)	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 169 total aligned reads displayed.

TGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGCAATC  >  NC_000913/2568086‑2568282

tgattaTTTCGTTAATGCCAATGGCCTTTAGGCGCTGTTAGTGGTGTTTTATTGGCGGATGCGGCGGAAACGCCTTATCCGCCCTACATGTGCAATCCCg                                                                                                   >  1:317773/1‑100 (MQ=18)

tgatgaTTTCGTTAATTCCCATCGCCTTTACCCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCg                                                                                                   <  1:1364549/100‑1 (MQ=255)

  atgatTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTa                                                                                                 <  2:435712/100‑1 (MQ=255)

     atTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGc                                                                                              <  1:1002265/100‑1 (MQ=255)

     atTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGc                                                                                              <  2:2859565/100‑1 (MQ=255)

     atTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGc                                                                                              <  2:207396/100‑1 (MQ=255)

      tttCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCt                                                                                             <  2:2175909/100‑1 (MQ=255)

      tttCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCt                                                                                             >  2:2856649/1‑100 (MQ=255)

      tatCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCt                                                                                             >  2:3539522/3‑100 (MQ=255)

       ttCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTg                                                                                            <  2:1691091/100‑1 (MQ=255)

        tCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTgg                                                                                           <  1:614492/100‑1 (MQ=255)

        tCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAGCCCGTAGGCTgg                                                                                           <  1:277011/100‑1 (MQ=255)

         cGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGa                                                                                          >  1:1333509/1‑100 (MQ=255)

          gTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGAt                                                                                         <  2:2273699/100‑1 (MQ=255)

          gTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGAt                                                                                         <  2:2276352/100‑1 (MQ=255)

            tAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATaa                                                                                       <  1:2954933/100‑1 (MQ=255)

            naaTTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATaa                                                                                       >  2:3368886/2‑100 (MQ=255)

               ttCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGAc                                                                                    >  1:197381/1‑100 (MQ=255)

                tCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGAcg                                                                                   >  1:1455165/1‑100 (MQ=255)

                  ccATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGAcgcg                                                                                 <  2:3222980/100‑1 (MQ=255)

                     tCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCa                                                                              <  1:1521386/100‑1 (MQ=255)

                       gCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCaa                                                                             >  1:2171404/1‑99 (MQ=255)

                        ccTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGc                                                                           <  1:1909764/100‑1 (MQ=255)

                           ttACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTc                                                                        <  2:3707101/100‑1 (MQ=255)

                            tACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCg                                                                       <  1:2025509/100‑1 (MQ=255)

                            tACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCg                                                                       <  1:641240/100‑1 (MQ=255)

                            tACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCg                                                                       >  2:3170356/1‑100 (MQ=255)

                            tACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCACTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCg                                                                       <  1:3042066/100‑1 (MQ=255)

                             aCTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGc                                                                      <  1:1762332/100‑1 (MQ=255)

                              cTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCa                                                                     <  2:1950153/100‑1 (MQ=255)

                              cTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCa                                                                     >  1:2775695/1‑100 (MQ=255)

                                cccTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATc                                                                   >  2:2333188/1‑100 (MQ=255)

                                 tacacaccccgcaggcctgataagatgcgccagcatcgcatcaggcctgcggggtgtgtagcgggtGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATcc                                                                  <  2:1162712‑M1/34‑1 (MQ=255)

                                   tGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCgg                                                                <  2:2429443/100‑1 (MQ=255)

                                      tAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCaa                                                             >  2:768976/1‑100 (MQ=255)

                                      tAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCa                                                              >  1:163134/1‑99 (MQ=255)

                                       aGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAAt                                                            <  2:3773591/100‑1 (MQ=255)

                                        gttgttATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAAtt                                                           >  1:2832703/1‑100 (MQ=255)

                                         ttgttATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTg                                                          <  2:3797961/100‑1 (MQ=255)

                                           gttATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAGGCGTCGCATCCGGCaa                                                             >  1:2703363/1‑95 (MQ=255)

                                             tatttattGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCAcc                                                      >  2:1229170/1‑100 (MQ=255)

                                             tatttattGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCAcc                                                      >  2:34614/1‑100 (MQ=255)

                                             tatttattGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCAcc                                                      >  2:759522/1‑100 (MQ=255)

                                                cctgataagatgcgccagcatcgcatcaggcctgcggggtgtgtagcgggtGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACcgcg                                                   <  2:2475682‑M1/49‑1 (MQ=255)

                                                 tattGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCgcgc                                                  <  2:2906724/100‑1 (MQ=255)

                                                 tattGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCgcgc                                                  >  1:3773760/1‑100 (MQ=255)

                                                 tattGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTCCAcc                                                      >  1:3257549/1‑96 (MQ=255)

                                                  attGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGTAGCGCGcc                                                 >  1:1318990/1‑100 (MQ=255)

                                                  attGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGcc                                                 >  2:2969138/1‑100 (MQ=255)

                                                   gataagatgcgccagcatcgcatcaggcctgcggggtgtgtagcgggtGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGCGCCa                                                <  1:1650604‑M1/52‑1 (MQ=255)

                                                     ggCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACt                                              >  2:2530140/1‑100 (MQ=255)

                                                       cGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTgg                                            >  1:2039131/1‑100 (MQ=255)

                                                            gcggcgTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACcggcgg                                         >  1:237206/1‑98 (MQ=255)

                                                            gcggcgTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGAt                                       <  2:2668228/100‑1 (MQ=255)

                                                            cgccagcatcgcatcaggcctgcggggtgtgtagcgggtGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGa                                        <  1:252902‑M1/60‑1 (MQ=255)

                                                             cggctTAAACGCATTTTCCGCTCTACATGTGCAATCCCGTAGGCTGGATAAGCCGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCTGAt                                       <  1:315581/99‑1 (MQ=18)

                                                              ggcgTAAACGCCTTATCCGCCCTACATGTGAAAGCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCCGAGgc                                     >  1:2507494/1‑100 (MQ=18)

                                                               gcgTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCACCCGGCAATTGCACCGCGCCACTGGCGGATgcg                                    <  2:3620493/100‑1 (MQ=255)

                                                                cgTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATgcgg                                   >  1:2129865/1‑100 (MQ=255)

                                                                 gTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATgcggc                                  <  2:3773784/100‑1 (MQ=255)

                                                                 gTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATgcggc                                  >  1:1137101/1‑100 (MQ=255)

                                                                 gTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGCCAAGCGTCGCATCCGGCAATCGCACCGCCCCCCTGGCCGAcgcg                                    >  1:1795836/1‑98 (MQ=17)

                                                                  tAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATgcggcg                                 <  1:1169297/100‑1 (MQ=255)

                                                                   aaaCGCCTTATCCGCCCTACATGTGCTAGCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGTCAATTGCACCGCGCCACTGGCGGATGCGGCGt                                <  1:975492/100‑1 (MQ=255)

                                                                   aaaCGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGt                                <  1:2011744/100‑1 (MQ=255)

                                                                    aaCGCCTTATCCGCCCTACATGTGCAATCCCGTAGTCTGGATAAGCCGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTg                               >  2:1301680/1‑100 (MQ=255)

                                                                    aaCGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTg                               <  2:545090/100‑1 (MQ=255)

                                                                     aCGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGa                              >  2:811560/1‑100 (MQ=255)

                                                                      cGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGAGccggc                                  >  1:2904722/1‑95 (MQ=255)

                                                                        ccTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACg                           <  2:586447/100‑1 (MQ=255)

                                                                          ttATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGcc                         <  1:3101558/100‑1 (MQ=255)

                                                                          gtATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGcc                         <  1:1072576/99‑1 (MQ=255)

                                                                           tATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCt                        <  2:737699/100‑1 (MQ=255)

                                                                            aTCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCtt                       <  2:1756180/100‑1 (MQ=255)

                                                                             tCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCAACGCCGCACTGGCGGGTGCGGCGAGAACGTCTTa                      >  1:3454283/1‑100 (MQ=18)

                                                                                gCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCCCTGGCGCATGCGGCGTGATCGCCTTATcc                   >  1:490543/1‑100 (MQ=255)

                                                                                gCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATcc                   <  2:1597779/100‑1 (MQ=255)

                                                                                gCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATcc                   >  2:889468/1‑100 (MQ=255)

                                                                                 cccTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCg                  <  1:748427/100‑1 (MQ=255)

                                                                                  ccTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTTCACCGCGCCACTGGCGGATAAGGCGTTCACGCCGCATCCg                  <  1:840001/99‑1 (MQ=18)

                                                                                   cTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGcc                <  2:956627/100‑1 (MQ=255)

                                                                                   cTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATAAGGCGTTCACGCCGCATCCGcc                <  2:1979986/100‑1 (MQ=18)

                                                                                    tACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGccc               >  1:1696184/1‑100 (MQ=255)

                                                                                    tACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGccc               <  2:358189/100‑1 (MQ=255)

                                                                                     aCATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCAGCGCGCCACTGGCGGGTGCGGCGTGAACGCCTTATCCGccc               >  1:3381461/1‑99 (MQ=255)

                                                                                      cATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTa             >  2:1030080/1‑100 (MQ=255)

                                                                                      cATGGGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATAAGGCGTTCACGCCGCATCCGcc                <  1:3543742/97‑1 (MQ=17)

                                                                                        tgtgCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAGTGGCTCCGCGTCGCTCTCGGATGCCGCCGGAACACCTAAACCGGCCTa             >  1:1430254/1‑98 (MQ=9)

                                                                                        tgtgCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACa           <  2:1057651/100‑1 (MQ=255)

                                                                                         gtgCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAt          <  1:3316756/100‑1 (MQ=255)

                                                                                          tgCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAtg         <  2:3052321/100‑1 (MQ=255)

                                                                                           gCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTAc            >  1:2124111/1‑96 (MQ=255)

                                                                                           gCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAtgt        >  2:1555873/1‑100 (MQ=255)

                                                                                           gCAATACCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGTCGGAAGCGGCGTTAACCCCCAAGCCGCCGTaact          >  1:1473718/1‑95 (MQ=17)

                                                                                            cAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAtgtg       >  2:718060/1‑100 (MQ=255)

                                                                                             aaTCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAtgtg       <  2:1396707/99‑1 (MQ=255)

                                                                                             aaTCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGc      >  1:3109285/1‑100 (MQ=255)

                                                                                             aaTCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATACGGCGTGAACGCCTTATCCGCCCTACAtgtg       <  2:1114849/99‑1 (MQ=255)

                                                                                             aaTCCCGTAGGCTGGATAAGACGCGGCAAGCGTCACATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGc      <  1:101150/100‑1 (MQ=255)

                                                                                               tCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCAGCCGGCAATTGCACCGCGCCACTGGCTGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGc      <  2:1539106/98‑1 (MQ=255)

TGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGCAATC  >  NC_000913/2568086‑2568282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.