New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4210001NA (NA)25 (0.190) 7/170 NT 17.4% intergenic (+152/‑42) gltV/rrlE tRNA‑Glu/23S ribosomal RNA of rrnE operon
?NC_000913 = 4210039 124 (0.920)intergenic (+190/‑4) gltV/rrlE tRNA‑Glu/23S ribosomal RNA of rrnE operon

Only 100 of 157 total aligned reads displayed.

TTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACG  >  NC_000913/4209921‑4210100
                                                                                |                                                                                                   
 ttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTa                                                                                 >  1:1050819/1‑100 (MQ=31)
  tGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAACCACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATCAGGACTCGTa                                                                                 >  1:3380289/1‑99 (MQ=11)
      ctTTAAAAATGTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCTAATTTTCGCAACACGATGATGAATCGTAAGaan                                                                            <  1:2504795/100‑2 (MQ=12)
       tttAAAAATCTGGATCAAGCTGAAAATTGAAACGCTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTGTCGCAACACGATGATGAATCGTAAGAAAc                                                                           >  1:2294654/1‑100 (MQ=16)
       tttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAAc                                                                           >  1:790847/1‑100 (MQ=32)
       tttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAAc                                                                           >  2:2338286/1‑100 (MQ=33)
        ttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAAc                                                                           <  1:3251044/99‑1 (MQ=33)
         tAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACAt                                                                         >  2:1715885/1‑100 (MQ=33)
         tAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAATCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACAt                                                                         >  1:826029/1‑100 (MQ=17)
          aaaaaTCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATc                                                                        <  2:3720808/100‑1 (MQ=33)
           aaaaTCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCt                                                                       >  2:2846766/1‑100 (MQ=33)
             aaTCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCtt                                                                      >  1:2534663/1‑99 (MQ=33)
             aaTCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTc                                                                     >  2:3453168/1‑100 (MQ=33)
              aTCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCg                                                                    <  1:565689/100‑1 (MQ=33)
               tCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCgg                                                                   <  2:1428652/100‑1 (MQ=33)
                cTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGG                                                                  >  1:1715198‑M2/1‑100 (MQ=255)
                cTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGG                                                                  <  2:88825‑M2/100‑1 (MQ=255)
                 tGGATCGAGCTCATAATTCAAGCACTCAACAACGACAGTTGTTGGTGAGTCTCTTAAATTTTCGCAACACGATGATCAATCGTAAGAATCATCTTctttt                                                                 <  1:3643342/100‑5 (MQ=11)
                 tGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGT                                                                 >  1:3342960‑M2/1‑100 (MQ=255)
                 tGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGT                                                                 <  2:1561243‑M2/100‑1 (MQ=255)
                   gATCAAGCTGACAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAGACGATGATGAATCGTAAGAAACATCTTCGGGTTG                                                               <  1:2005690‑M2/100‑1 (MQ=255)
                   gATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTG                                                               >  2:205287‑M2/1‑100 (MQ=255)
                     tCAAGCTGAAAATTGAAACACTGAACAACTAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTtgtg                                                             <  2:3044244/100‑1 (MQ=18)
                     tCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTtgtg                                                             <  2:1682680/100‑1 (MQ=33)
                      cAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGa                                                            <  1:1871188/100‑1 (MQ=33)
                      cAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGa                                                            >  2:2271511/1‑100 (MQ=32)
                      cAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGa                                                            <  1:2880868/100‑1 (MQ=33)
                      cAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGa                                                            <  1:2474165/100‑1 (MQ=32)
                       aaGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAg                                                           <  2:1830772/100‑1 (MQ=33)
                       aaGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAg                                                           <  1:1294530/100‑1 (MQ=33)
                       aaGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAg                                                           >  2:827985/1‑100 (MQ=33)
                        aGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAgg                                                          <  2:3792796/100‑1 (MQ=33)
                        aGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAgg                                                          <  2:538011/100‑1 (MQ=33)
                            gAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTaa                                                      >  1:1179315/1‑100 (MQ=33)
                            gAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTaa                                                      >  2:3136450/1‑100 (MQ=33)
                              aaaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGc                                                    <  2:3060794/100‑1 (MQ=33)
                               aaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCg                                                   <  1:1280759/100‑1 (MQ=33)
                                  tGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACt                                                <  1:3005591/100‑1 (MQ=33)
                                   gAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTa                                               >  2:2350022/1‑100 (MQ=33)
                                      acacTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc                                            <  2:523854/100‑1 (MQ=33)
                                      acacTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc                                            >  1:93745/1‑100 (MQ=32)
                                       cacTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg                                           <  1:2313040/100‑1 (MQ=33)
                                       cacTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg                                           >  1:518540/1‑100 (MQ=32)
                                        acTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGt                                          <  1:3432535/100‑1 (MQ=33)
                                         cTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa                                         <  2:2753376/100‑1 (MQ=33)
                                         cTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa                                         >  1:297524/1‑100 (MQ=33)
                                         cTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa                                         >  1:3344874/1‑100 (MQ=33)
                                          tGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTac                                        <  2:3493524/100‑1 (MQ=33)
                                          tGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTac                                        >  2:1584951/1‑100 (MQ=33)
                                          tGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTac                                        >  2:659673/1‑100 (MQ=33)
                                           gAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTGTCGCAACACGATGATGAATCGACAGAAACATCTTAGGATTGtgaaaaattgagagactcacgaac                                       <  1:3540319‑M2/100‑25 (MQ=255)
                                             acaacGAAAGTTGTTCGTGAGTCTCTCAAGTTTTCGCAACGCGATGATGAATCGTAAGAAACATCTTCGGGTTGTGATTTTAAGCGACTAAGCGTACACg                                     <  1:294458/100‑1 (MQ=11)
                                               aacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACgg                                    >  2:2611426/1‑99 (MQ=33)
                                               aacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGt                                   >  1:2603084/1‑100 (MQ=33)
                                                tctaaaGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                                  <  2:2417574/97‑1 (MQ=18)
                                                acGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                                  <  1:1604484/100‑1 (MQ=33)
                                                 cGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTgg                                 <  2:2778318/100‑1 (MQ=32)
                                                 cGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAACCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTgg                                 <  2:3128652/100‑1 (MQ=18)
                                                   aaaGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTgaga                               >  1:2417562/1‑97 (MQ=18)
                                                    aaGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATg                              <  1:2120645/100‑1 (MQ=33)
                                                     aGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGc                             <  1:3528083/100‑1 (MQ=32)
                                                      gttgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGcc                            <  2:2603097/100‑1 (MQ=32)
                                                      gttgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGcc                            >  2:3356458/1‑100 (MQ=33)
                                                        tgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCt                          >  1:3206277/1‑100 (MQ=33)
                                                         gttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGcctct                         <  2:1104537/100‑4 (MQ=18)
                                                         gttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTg                         >  2:3683415/1‑100 (MQ=33)
                                                          ttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTgg                        >  2:1168504/1‑100 (MQ=33)
                                                           tCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTCGTGAGGTTACGCGACTAAGCGTACACGGGGGAAGCCCtag                        >  2:3435074/1‑97 (MQ=11)
                                                            cGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCa                      >  1:3135436/1‑100 (MQ=33)
                                                            cGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCa                      <  2:1590906/100‑1 (MQ=32)
                                                             gTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAg                     >  1:1161897/1‑100 (MQ=33)
                                                             gTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAg                     <  2:1067756/100‑1 (MQ=33)
                                                                aGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCa                  <  2:34289/100‑1 (MQ=32)
                                                                   ctctcAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCagag               >  1:492077/1‑100 (MQ=33)
                                                                    tctcAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAgg              >  1:66917/1‑100 (MQ=33)
                                                                    tctcAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAgg              <  1:1715876/100‑1 (MQ=33)
                                                                    tctcAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAgg              >  1:1043500/1‑100 (MQ=33)
                                                                     ctcAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGc             <  1:1939861/100‑1 (MQ=33)
                                                                     ctcAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGc             >  2:3526464/1‑100 (MQ=33)
                                                                     ctcAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGc             >  1:2386067/1‑100 (MQ=33)
                                                                     ctcAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGc             <  1:3494604/100‑1 (MQ=33)
                                                                      tcAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCg            >  2:2868531/1‑100 (MQ=33)
                                                                      tcAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTCcgaaaatttgagagactcccgaacaactttcgttgttcagtgtttcaatt             <  1:1483555‑M2/99‑51 (MQ=255)
                                                                      tcAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGtgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattt            <  2:2116035‑M2/100‑52 (MQ=255)
                                                                      tcAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattt            <  2:977048‑M2/100‑52 (MQ=255)
                                                                       cAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGa           <  1:2968661/100‑1 (MQ=32)
                                                                       cAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGCTGtgaaaatttgagagactcacgaacaactttcgttgttcagtgcccttcgcat           <  1:284090‑M2/100‑53 (MQ=255)
                                                                         aaTTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGtgaaaatttgagagactcacgaacaactttcattgttcagtgtttcaattttca         <  2:3584713‑M2/100‑55 (MQ=255)
                                                                         aaTTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATg         >  1:1434221/1‑100 (MQ=33)
                                                                         aaTTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttca         <  2:646837‑M2/100‑55 (MQ=255)
                                                                           ttttCGGAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCATTCAGAGGCGATGa        <  1:3590428/99‑1 (MQ=12)
                                                                           ttttCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGtgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagc       <  1:385597‑M2/100‑57 (MQ=255)
                                                                           ttttCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGaa       <  2:297529/100‑1 (MQ=33)
                                                                             ttCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGcgaaaattggagagacgcacgaacaactttcgttgttcagtgtttcaattttcagatt     <  1:2575768‑M2/100‑59 (MQ=255)
                                                                             ttCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAgg     >  2:1547101/1‑100 (MQ=33)
                                                                             ttCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAgg     <  2:1050826/100‑1 (MQ=33)
                                                                              tCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGa    <  2:154319/100‑1 (MQ=33)
                                                                                gCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcattgttcagtgtttcaattttcagcttgat  <  2:2192485‑M2/100‑62 (MQ=255)
                                                                                gCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACg  <  2:1297031/100‑1 (MQ=33)
                                                                                gCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgat  <  1:1807714‑M2/100‑62 (MQ=255)
                                                                                |                                                                                                   
TTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACG  >  NC_000913/4209921‑4210100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.