New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729452	NA (NA)	13 (0.110)	6/158	NT	NA	intergenic (‑8/+164)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
	?	NC_000913	= 2729474	NA (NA)					intergenic (‑30/+142)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon

AGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCAT  >  NC_000913/2729432‑2729573                                           |                                                                                                    atacggaagggACACGAAAATTGCTTATCACGCGTTGGGTGTTATTTTCGTGTAGGGGGCGTTTTCATTTATTCATAGCTCTCGGGCTTATTCTCTTc                                              <  1:445395/90‑1 (MQ=0)                           aTCACGCGTTGCGTGATATTTGCGTGTAGCGAGAGATGTCATTCAAAGAAAGCAAAAGACAGGACTATGTTCAAACCGACTCCAAAAGCGTAAACGcc                    >  1:2993753/1‑98 (MQ=0)                               cgcgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTa              <  2:2897919/100‑1 (MQ=11)                                gcgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAt             <  2:2181738/100‑1 (MQ=31)                                  gTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc           <  1:3025472/100‑1 (MQ=32)                                   ttGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa          <  1:117227/100‑1 (MQ=32)                                   ttGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa          >  1:3500169/1‑100 (MQ=33)                                   ttGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa          >  2:1987818/1‑100 (MQ=32)                                    tGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc         <  1:1519123/100‑1 (MQ=33)                                    tGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc         <  2:1255255/100‑1 (MQ=33)                                    tGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc         <  2:2868006/100‑1 (MQ=33)                                    tGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc         <  2:2742301/100‑1 (MQ=33)                                     gCGTGATATCTTCGTGTAGGGTGAGCTTTCATTAATAGAGAGCGAACGGCCTTATTCTCTTCATCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc         <  1:1601503/99‑1 (MQ=255)                                      cGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCTAACGGCCTTATTCTCTTCATCATCACTCCCAACGCGTAAACGCCTTGCTATTCACtt       >  1:2904345/1‑100 (MQ=255)                                      cGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt       >  1:2495705/1‑100 (MQ=32)                                       gTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCTAACGGCGGTATCCTCTTCAGCCTCACTCACAACGCGTAAACGCCTTGCTATTCACttt      >  1:3599457/1‑100 (MQ=11)                                       gTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGATCGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt      <  1:2431540/100‑1 (MQ=18)                                       gTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGATCGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt      <  1:2431755/100‑1 (MQ=18)                                       gTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTGCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttn      <  2:1774373/100‑2 (MQ=17)                                       gTGATATTTTCGTGTAGGGTGAACTTTCATTAATAGAAAGCGCACGGCGTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt      >  1:2216181/1‑100 (MQ=255)                                        tGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt     <  1:3815567/100‑1 (MQ=35)                                           tatTTTCGTGTAGGGTGAGCGTTCATTAATAGAAAGCTCACGGCCGTATTCTCTTCAGCCTCACTACCAACGCGTAAACGCCTTGCTATTCACTTTtcat  >  1:1479922/1‑100 (MQ=14)                                           tatTTTCGTGTAGGGAAAGCTTGCATTAATAGAAAGCTCTCGGCGTTAGCCGCTTCAGCATCACTCCAAACGCGTAAAGGCCTTGCTCTTCACTTTtcat  >  1:1253321/1‑100 (MQ=2)                                           |                                                                                                    AGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCAT  >  NC_000913/2729432‑2729573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.